Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 145 8e-30
seq1431 140 3e-28
seq404 134 1e-26
>seq1090
Length=275775
Score = 145 bits (160), Expect = 8e-30
Identities = 1087/1754 (62%), Gaps = 30/1754 (2%)
Strand=Plus/Minus
Query 153690 ATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTC 153749
|| |||| || || |||||||||| ||||||||||||||| || || | ||| ||||
Sbjct 261567 ATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTC 261508
Query 153750 CAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTA 153809
|| | | | || | ||| ||| || | |||||| || | | | ||
Sbjct 261507 CAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTG 261448
Query 153810 AACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTTTTT- 153868
|| || || || || || |||||||| || ||||| || ||||| | ||| | | ||
Sbjct 261447 AAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTG 261388
Query 153869 ACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAAT 153928
|| | |||||||| || |||||||||| || || || | ||| || || ||
Sbjct 261387 ACAGAA-ATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGGAATTTCCTCGAT 261329
Query 153929 TTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAAATT 153988
|| || | ||| | | | ||||| ||| ||| | || || | | |
Sbjct 261328 GTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTC 261269
Query 153989 TAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATAC 154048
||| ||||||| || ||| || || || | | | || || || | | |||
Sbjct 261268 GAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTAC 261209
Query 154049 GCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTG 154108
||||| ||| | || ||| |||| ||||| | ||| |||||||| | |||||
Sbjct 261208 ACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTG 261149
Query 154109 AGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGC 154168
|| || | || |||||||| |||| | || || || || | ||| ||||| ||
Sbjct 261148 GGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGC 261089
Query 154169 AATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTC 154228
||| | |||| | ||||||| ||| | | ||| || | ||||||||||||
Sbjct 261088 AATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTC 261029
Query 154229 GTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAG 154288
||||| | | ||| ||| | || || | ||| | || || || | |
Sbjct 261028 ATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTG 260969
Query 154289 TTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTT 154348
|| ||||| || ||||| ||||| || || ||||||| | ||||| |||||||
Sbjct 260968 TTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTG 260909
Query 154349 GTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGC 154408
|| || | ||| | || |||||||| || | | || | | | || ||||||
Sbjct 260908 ATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGC 260849
Query 154409 GAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTC 154468
| || || | || | |||| ||| | ||| | | ||| |||| | |||| |||
Sbjct 260848 AAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTG 260789
Query 154469 CAGAGGATAATAATTGATATCGATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNN 154528
||| ||||| || |||| ||| || ||||| || |
Sbjct 260788 CAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATAC 260729
Query 154529 NNNNNNNNATGCGACAAAATCAAACACTC---CGCTTTTAATAAAACGATTTACACACAC 154585
|| ||| ||||| | || | | ||| || | || |
Sbjct 260728 TGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTCACAAACATGTTCAGGCAAAT 260669
Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTG--TATTGCACAATTTCTGCG 154643
|| ||||||||||| || || ||||| || | | ||| |||| || ||||||| |
Sbjct 260668 GGAGGCCAAGTTGCAGACAGCGATTTCATCCG--GTGCTGAATATTCAACGATTTCTGTG 260611
Query 154644 CACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCG 154703
|||||||| |||||| ||||||||| | |||| ||||| |||| || || | |
Sbjct 260610 CACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAG 260551
Query 154704 TCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG--TGCGAA 154761
|| || | | ||||| || || || ||||| ||||||| ||| ||||| | | ||
Sbjct 260550 TCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAA 260491
Query 154762 ACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTC--GC--TCTCATATTGTTCG 154817
| | || |||||| || | | || | | ||| | || | || |||| ||||
Sbjct 260490 AGCGCCT--GCGCCTTAA-TGGTTCTGT---TAGCTTTGCCGGCCTTTTCGTATTTTTCG 260437
Query 154818 TACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACAC 154877
|| || || ||||| ||| || | || || | || ||||| || ||||||
Sbjct 260436 TAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACAC 260377
Query 154878 ATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAA 154937
|| | ||||| |||||| || || ||| |||||||||||| || | ||| | |
Sbjct 260376 ATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGA 260317
Query 154938 GCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAA 154997
|| || || | ||| | || | ||||| ||| | || ||||||| ||||
Sbjct 260316 GCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAA 260257
Query 154998 AAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT- 155056
|| ||| | ||||| | ||||| || || || || | ||| | || || |||||
Sbjct 260256 AACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTG 260197
Query 155057 --TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACG 155114
|| || ||||| |||| || || ||||||| | || | |||| || |||
Sbjct 260196 CCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAA 260137
Query 155115 CCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACA 155174
|| ||| || || || ||||| ||| | | || ||| || ||| |||
Sbjct 260136 CCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACA 260077
Query 155175 TTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTAC 155234
|| | || | |||||| | |||| || || ||||| | | ||| || | |
Sbjct 260076 TTGATTCCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAA 260017
Query 155235 ATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGA 155294
|| || | || || | || ||||| | |||||| ||||| ||||| || ||
Sbjct 260016 ATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGA 259957
Query 155295 GGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA-- 155352
| | || ||||| ||||| || || || ||||| | | | ||| |
Sbjct 259956 TTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAAA-GTAACGCT--CGGACAAC 259900
Query 155353 -AGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGC 155411
|||| |||||||| ||||| | || ||||| || || ||||| | ||||| |||
Sbjct 259899 CAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGC 259840
Query 155412 ATCAGCATGTGTTG 155425
|||||||| |||||
Sbjct 259839 ATCAGCATATGTTG 259826
>seq1431
Length=173026
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || ||||||| | |||| ||||| ||| ||||| ||||| |||||||| ||||
Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | ||||||||||| || |||||| | || | || || || || || |||
Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCAC 64395
||||| ||||| || || || || ||||||| || | ||||||| |||| || ||
Sbjct 151200 ATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGC-TCAAC 151142
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||| | || | ||||||||| || |||||||| || ||||| ||||| ||
Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
>seq404
Length=684826
Score = 134 bits (148), Expect = 1e-26
Identities = 150/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| |||||||||||||| |||||||| | | || ||| |||||||||||||||||||
Sbjct 506544 GTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCA 506485
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| |||| | ||||| ||||| || || ||||||||||| ||||| | |||| |||||
Sbjct 506484 GCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTGGCTTT 506426
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| || | |||||| | || || || | || | ||| || || ||||| ||
Sbjct 506425 AACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGT 506366
Query 64426 TTTTACGAAAATTTGCAT 64443
|||||| || ||||||||
Sbjct 506365 TTTTACAAAGATTTGCAT 506348
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||| | | |||||| | ||| | || ||||| || || |||||||| || |
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | ||||| | ||| ||||||||| | || | || ||||| || || |||
Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| |||||||| ||||| ||||| ||| ||| || | |||||| || ||||||
Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||| || |||||||| || ||||||||||||||
Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| |||| ||| | || |||||||| || |||||||| |||| | ||||| | ||
Sbjct 509222 AAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATC 509163
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | ||||||||||| | || | || || ||||| || ||||| |||||||| ||
Sbjct 509162 TTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATC 509103
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409
||| | |||| ||||| ||| || | ||||| | || ||||||| || | ||
Sbjct 509102 TTG-AATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGG 509044
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || || |||| || || ||||| ||||||||
Sbjct 509043 TTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||||||||||||||| || || | | || || ||||||| | ||||||||
Sbjct 506772 GTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCA 506713
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| |||| | ||||| || || || ||||| |||||||| ||||| ||||| |||
Sbjct 506712 GCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTA 506653
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | |||||| | || ||||| | || | || || || || || ||
Sbjct 506652 ACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTC 506593
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| ||||||||
Sbjct 506592 TTAACGAATATTTGCAT 506576
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|||| ||| | || || || || || |||||||| || | | || || | |||||
Sbjct 507012 ACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCC 506953
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
| |||||||||||| |||| | ||||| ||||| || ||||| ||||| || |||||
Sbjct 506952 AACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG- 506894
Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
| | || ||||| || || | || || | || ||||| | || | ||| ||
Sbjct 506893 AATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTT 506834
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| ||||| || || ||||| ||||||||
Sbjct 506833 GCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499569590966480
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