Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1090 145 8e-30 seq1431 140 3e-28 seq404 134 1e-26 >seq1090 Length=275775 Score = 145 bits (160), Expect = 8e-30 Identities = 1087/1754 (62%), Gaps = 30/1754 (2%) Strand=Plus/Minus Query 153690 ATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTC 153749 || |||| || || |||||||||| ||||||||||||||| || || | ||| |||| Sbjct 261567 ATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTC 261508 Query 153750 CAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTA 153809 || | | | || | ||| ||| || | |||||| || | | | || Sbjct 261507 CAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTG 261448 Query 153810 AACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTTTTT- 153868 || || || || || || |||||||| || ||||| || ||||| | ||| | | || Sbjct 261447 AAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTG 261388 Query 153869 ACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAAT 153928 || | |||||||| || |||||||||| || || || | ||| || || || Sbjct 261387 ACAGAA-ATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGGAATTTCCTCGAT 261329 Query 153929 TTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACAAATT 153988 || || | ||| | | | ||||| ||| ||| | || || | | | Sbjct 261328 GTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTC 261269 Query 153989 TAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATAC 154048 ||| ||||||| || ||| || || || | | | || || || | | ||| Sbjct 261268 GAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTAC 261209 Query 154049 GCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTG 154108 ||||| ||| | || ||| |||| ||||| | ||| |||||||| | ||||| Sbjct 261208 ACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTG 261149 Query 154109 AGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGC 154168 || || | || |||||||| |||| | || || || || | ||| ||||| || Sbjct 261148 GGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGC 261089 Query 154169 AATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTC 154228 ||| | |||| | ||||||| ||| | | ||| || | |||||||||||| Sbjct 261088 AATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTC 261029 Query 154229 GTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAG 154288 ||||| | | ||| ||| | || || | ||| | || || || | | Sbjct 261028 ATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTG 260969 Query 154289 TTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTT 154348 || ||||| || ||||| ||||| || || ||||||| | ||||| ||||||| Sbjct 260968 TTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTG 260909 Query 154349 GTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGC 154408 || || | ||| | || |||||||| || | | || | | | || |||||| Sbjct 260908 ATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGC 260849 Query 154409 GAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTC 154468 | || || | || | |||| ||| | ||| | | ||| |||| | |||| ||| Sbjct 260848 AAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTG 260789 Query 154469 CAGAGGATAATAATTGATATCGATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNN 154528 ||| ||||| || |||| ||| || ||||| || | Sbjct 260788 CAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATAC 260729 Query 154529 NNNNNNNNATGCGACAAAATCAAACACTC---CGCTTTTAATAAAACGATTTACACACAC 154585 || ||| ||||| | || | | ||| || | || | Sbjct 260728 TGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTCACAAACATGTTCAGGCAAAT 260669 Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTG--TATTGCACAATTTCTGCG 154643 || ||||||||||| || || ||||| || | | ||| |||| || ||||||| | Sbjct 260668 GGAGGCCAAGTTGCAGACAGCGATTTCATCCG--GTGCTGAATATTCAACGATTTCTGTG 260611 Query 154644 CACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCG 154703 |||||||| |||||| ||||||||| | |||| ||||| |||| || || | | Sbjct 260610 CACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAG 260551 Query 154704 TCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG--TGCGAA 154761 || || | | ||||| || || || ||||| ||||||| ||| ||||| | | || Sbjct 260550 TCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAA 260491 Query 154762 ACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTC--GC--TCTCATATTGTTCG 154817 | | || |||||| || | | || | | ||| | || | || |||| |||| Sbjct 260490 AGCGCCT--GCGCCTTAA-TGGTTCTGT---TAGCTTTGCCGGCCTTTTCGTATTTTTCG 260437 Query 154818 TACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACAC 154877 || || || ||||| ||| || | || || | || ||||| || |||||| Sbjct 260436 TAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACAC 260377 Query 154878 ATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAA 154937 || | ||||| |||||| || || ||| |||||||||||| || | ||| | | Sbjct 260376 ATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGA 260317 Query 154938 GCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAA 154997 || || || | ||| | || | ||||| ||| | || ||||||| |||| Sbjct 260316 GCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAA 260257 Query 154998 AAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT- 155056 || ||| | ||||| | ||||| || || || || | ||| | || || ||||| Sbjct 260256 AACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTG 260197 Query 155057 --TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACG 155114 || || ||||| |||| || || ||||||| | || | |||| || ||| Sbjct 260196 CCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAA 260137 Query 155115 CCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACA 155174 || ||| || || || ||||| ||| | | || ||| || ||| ||| Sbjct 260136 CCATTGGAGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACA 260077 Query 155175 TTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTAC 155234 || | || | |||||| | |||| || || ||||| | | ||| || | | Sbjct 260076 TTGATTCCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAA 260017 Query 155235 ATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGA 155294 || || | || || | || ||||| | |||||| ||||| ||||| || || Sbjct 260016 ATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGA 259957 Query 155295 GGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTA-- 155352 | | || ||||| ||||| || || || ||||| | | | ||| | Sbjct 259956 TTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAAA-GTAACGCT--CGGACAAC 259900 Query 155353 -AGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGC 155411 |||| |||||||| ||||| | || ||||| || || ||||| | ||||| ||| Sbjct 259899 CAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGC 259840 Query 155412 ATCAGCATGTGTTG 155425 |||||||| ||||| Sbjct 259839 ATCAGCATATGTTG 259826 >seq1431 Length=173026 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||||| | |||| ||||| ||| ||||| ||||| |||||||| |||| Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||||||||| || |||||| | || | || || || || || ||| Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCAC 64395 ||||| ||||| || || || || ||||||| || | ||||||| |||| || || Sbjct 151200 ATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGC-TCAAC 151142 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | || | ||||||||| || |||||||| || ||||| ||||| || Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq404 Length=684826 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| |||||||| | | || ||| ||||||||||||||||||| Sbjct 506544 GTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCA 506485 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | ||||| ||||| || || ||||||||||| ||||| | |||| ||||| Sbjct 506484 GCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTG-AATTTTGGCTTT 506426 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | |||||| | || || || | || | ||| || || ||||| || Sbjct 506425 AACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGT 506366 Query 64426 TTTTACGAAAATTTGCAT 64443 |||||| || |||||||| Sbjct 506365 TTTTACAAAGATTTGCAT 506348 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | |||||| | ||| | || ||||| || || |||||||| || | Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||| ||||||||| | || | || ||||| || || ||| Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| ||||| ||||| ||| ||| || | |||||| || |||||| Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || |||||||| || |||||||||||||| Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || |||||||| || |||||||| |||| | ||||| | || Sbjct 509222 AAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATC 509163 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||||||||| | || | || || ||||| || ||||| |||||||| || Sbjct 509162 TTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATC 509103 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||| ||||| ||| || | ||||| | || ||||||| || | || Sbjct 509102 TTG-AATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGG 509044 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || |||| || || ||||| |||||||| Sbjct 509043 TTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||||||||| || || | | || || ||||||| | |||||||| Sbjct 506772 GTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCA 506713 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 506712 GCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTA 506653 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| | || ||||| | || | || || || || || || Sbjct 506652 ACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTC 506593 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 506592 TTAACGAATATTTGCAT 506576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || || || || || |||||||| || | | || || | ||||| Sbjct 507012 ACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCTTCC 506953 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | |||||||||||| |||| | ||||| ||||| || ||||| ||||| || ||||| Sbjct 506952 AACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG- 506894 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | | || ||||| || || | || || | || ||||| | || | ||| || Sbjct 506893 AATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTT 506834 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| || || ||||| |||||||| Sbjct 506833 GCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499569590966480