Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1090 100 3e-16 >seq1090 Length=275775 Score = 100 bits (110), Expect = 3e-16 Identities = 286/440 (65%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 ||||| ||||||| |||||||| |||| | ||||| || || || ||||| Sbjct 259961 CCACAATTGTCTTCTTGTTTCCTCTTGACCATGGTTGCCGATTCTATTGAGGGCATTTTT 260020 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | || | ||||| | || || |||| || || || || || |||| |||| Sbjct 260021 AAGTCTGTGGAGCAGTGTGCTATGATTTCCAAATCAGCTGGAGGTATTGGAATCAATGTC 260080 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | ||| | | ||| ||| || ||||| |||||||| || | Sbjct 260081 CATTGCATTCGCGCTAAGGGAACTTCCATAGCCGGCACTAATGGAACCTCCAATGGTTTG 260140 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||| | | || ||||| || | || |||||||| || ||||||||||| | Sbjct 260141 GTGCCCATGTTAAGAGTATTCAATAATGTTGCACGCTACGTTGATCAGGGTGGTGGCAAA 260200 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || |||| | || || ||||| ||||| | | || | Sbjct 260201 CGTCCTGGTGCATTTGCCATCTACTTGGAACCTTGGCATTCGGACATCTTTGAGTTTTTG 260260 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287 || | |||||| |||||| || | | | |||||||| || ||||| ||||| Sbjct 260261 GATTTAAAAAAGAATACCGGCAAAGAAGAGCATCGTGCCAGAGATCTTTTCTATGCTCTT 260320 Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGT 94347 ||| | ||||| | |||||| ||| || || ||||| || ||| || | ||| Sbjct 260321 TGGATACCAGATTTGTTTATGCGACGTGTGGAAGAAAACGGCGATTGGTCCCTAATGTGT 260380 Query 94348 CCCAATGAATGTCCCGGACT 94367 || | ||||||| ||||| Sbjct 260381 CCTCACAAATGTCCAGGACT 260400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494648731790320