Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1090 159 3e-34 seq1431 120 3e-22 seq1094 113 4e-20 seq404 107 2e-18 >seq1090 Length=275775 Score = 159 bits (176), Expect = 3e-34 Identities = 689/1070 (64%), Gaps = 52/1070 (5%) Strand=Plus/Minus Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139 |||| | ||||| || | ||| || ||||| | ||||| || || | || || ||||| Sbjct 261187 AGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCAT 261128 Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG 153199 | |||| | || ||||| || | || || ||| ||||| | || Sbjct 261127 GGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGC 261068 Query 153200 CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259 ||||||||| || | | || | |||||||||||| || || | | ||| || Sbjct 261067 CCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCT 261008 Query 153260 GGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC 153319 | || || || | | |||| ||| || || ||| |||| ||| || || || Sbjct 261007 CACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGC 260948 Query 153320 CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGA----GAACGGCCGCTT 153375 || | || |||||||| || ||||| ||||||| ||| | ||| |||| | Sbjct 260947 TTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAA-GGCC---T 260892 Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435 | ||||| ||||| || |||| || | | | ||||| | |||||||| ||| | Sbjct 260891 CCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAA 260832 Query 153436 CGCCGATGGGTCGATGCTTC----TCG--TTGCTGCGCCTCGCGCTCGCTATGGGATAGT 153489 ||| ||||| ||||| | | | || ||| ||||| || | ||||||| Sbjct 260831 TGCCAATGGGACGATGTCTGAGATTAGATTTTCTG-GCCTCCTGC-----AGTGGATAGT 260778 Query 153490 GATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTT 153549 ||| ||| || ||||||||||| |||||| |||| ||||||| || | ||| | || Sbjct 260777 AGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATT 260718 Query 153550 TCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCC 153608 ||| || ||| | || ||||| |||| || | |||| | ||| || ||| Sbjct 260717 TCTTAAAGTCAAAAGTTTTTTCGG----GCGTCACAAACATGTTCAGGCAAATGGAGGCC 260662 Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGT 153666 | || ||||| || | || || | || |||| || | ||||| || | ||| | | Sbjct 260661 AAGTTGCAGACAGCGATTTCATCCG-GT-GCTGAATATTCAACGATTTCTGTGCACAAAT 260604 Query 153667 TGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGA 153726 |||||||||| ||| ||| | |||||| ||||| ||||||||||| || | ||| || | Sbjct 260603 TGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAA 260544 Query 153727 AGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGT 153783 | |||||||| || || || || ||||| | ||| | || ||||| | || Sbjct 260543 ATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAA---AGCG 260487 Query 153784 CCTGCGCTCGCACCCGCTGCCGATAGC--GGCCCTCGCTCTCGTATCGCTCGTACAGTCG 153841 ||||||| | | | | | | |||| ||| | | |||||| ||||| || Sbjct 260486 CCTGCGC-CTTA-ATGGTTCTGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTT 260429 Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901 ||||| || || || || || ||| || ||||| | || |||||||| || || Sbjct 260428 GTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGA 260369 Query 153902 CCACATATCGTCG---GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 ||| |||| || | | || |||||||| |||| ||| || | ||| || || || Sbjct 260368 CCA---ATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATA 260312 Query 153959 CATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACG 154016 | || || | || | ||| || || ||| | || ||| | || | | Sbjct 260311 GAAAAGATCTCTGGCACGATGC--TCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAAC 260254 Query 154017 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---T 154073 | ||||||| | ||||| ||||| | ||||| ||| | ||||| ||| || Sbjct 260253 TCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCA 260194 Query 154074 CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 || |||||||| |||| ||| | | ||| ||||| || | | |||||| Sbjct 260193 CCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGG 260144 >seq1431 Length=173026 Score = 120 bits (132), Expect = 3e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || ||||| |||||||||||||| | |||| |||||||| ||||||||||| | Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTC--T 151264 Query 138447 CATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 ||| ||||| || || || ||||| |||| | | |||| ||| ||||| || || Sbjct 151263 GATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGT 151204 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTC 138563 || || || |||||||| ||| | || | |||| | ||| | || || | || ||| Sbjct 151203 GGAATTCCCTCTTTGTCC-TGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTC 151145 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | ||| | || || || || | |||||| |||||||||||||| Sbjct 151144 AACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094 >seq1094 Length=241507 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | ||||||||||||||||||||||| | Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | |||||| || | | |||| | ||| ||||| || || || Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| || | | ||| | ||||||| | ||| ||| Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || || || ||||| |||||||| Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281 >seq404 Length=684826 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||||||||| | | | |||||||| || |||||||||||| | Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | || || |||| | || | |||||||||||| || || Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | ||| | | ||| | |||||| | | ||| || Sbjct 506910 ATGCCTTCCTTGTC-TTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGAC 506852 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| ||||||| || || || || || ||||| Sbjct 506851 TTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || ||||| | | || || |||||||| ||||| || Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | || | ||||||||||| || || Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| |||| | ||||| | ||| | ||| || | | ||| | Sbjct 506455 GATTCCTTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAA 506397 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||||||||||| ||||||||||| || |||||| Sbjct 506396 CCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||||||||| | | | |||||||| || |||||||||||| | Sbjct 508780 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 508721 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||||| | | |||| | ||| || || || || || Sbjct 508720 AGTGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 508661 Query 138508 ATACCTTC 138515 |||||||| Sbjct 508660 ATACCTTC 508653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496187700102240