Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 159 3e-34
seq1431 120 3e-22
seq1094 113 4e-20
seq404 107 2e-18
>seq1090
Length=275775
Score = 159 bits (176), Expect = 3e-34
Identities = 689/1070 (64%), Gaps = 52/1070 (5%)
Strand=Plus/Minus
Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139
|||| | ||||| || | ||| || ||||| | ||||| || || | || || |||||
Sbjct 261187 AGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCAT 261128
Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTG 153199
| |||| | || ||||| || | || || ||| ||||| | ||
Sbjct 261127 GGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGC 261068
Query 153200 CCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259
||||||||| || | | || | |||||||||||| || || | | ||| ||
Sbjct 261067 CCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCT 261008
Query 153260 GGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC 153319
| || || || | | |||| ||| || || ||| |||| ||| || || ||
Sbjct 261007 CACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGC 260948
Query 153320 CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGA----GAACGGCCGCTT 153375
|| | || |||||||| || ||||| ||||||| ||| | ||| |||| |
Sbjct 260947 TTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAA-GGCC---T 260892
Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435
| ||||| ||||| || |||| || | | | ||||| | |||||||| ||| |
Sbjct 260891 CCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAA 260832
Query 153436 CGCCGATGGGTCGATGCTTC----TCG--TTGCTGCGCCTCGCGCTCGCTATGGGATAGT 153489
||| ||||| ||||| | | | || ||| ||||| || | |||||||
Sbjct 260831 TGCCAATGGGACGATGTCTGAGATTAGATTTTCTG-GCCTCCTGC-----AGTGGATAGT 260778
Query 153490 GATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTT 153549
||| ||| || ||||||||||| |||||| |||| ||||||| || | ||| | ||
Sbjct 260777 AGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATT 260718
Query 153550 TCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCC 153608
||| || ||| | || ||||| |||| || | |||| | ||| || |||
Sbjct 260717 TCTTAAAGTCAAAAGTTTTTTCGG----GCGTCACAAACATGTTCAGGCAAATGGAGGCC 260662
Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGT 153666
| || ||||| || | || || | || |||| || | ||||| || | ||| | |
Sbjct 260661 AAGTTGCAGACAGCGATTTCATCCG-GT-GCTGAATATTCAACGATTTCTGTGCACAAAT 260604
Query 153667 TGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGA 153726
|||||||||| ||| ||| | |||||| ||||| ||||||||||| || | ||| || |
Sbjct 260603 TGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAA 260544
Query 153727 AGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGT 153783
| |||||||| || || || || ||||| | ||| | || ||||| | ||
Sbjct 260543 ATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAA---AGCG 260487
Query 153784 CCTGCGCTCGCACCCGCTGCCGATAGC--GGCCCTCGCTCTCGTATCGCTCGTACAGTCG 153841
||||||| | | | | | | |||| ||| | | |||||| ||||| ||
Sbjct 260486 CCTGCGC-CTTA-ATGGTTCTGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTT 260429
Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901
||||| || || || || || ||| || ||||| | || |||||||| || ||
Sbjct 260428 GTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGA 260369
Query 153902 CCACATATCGTCG---GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958
||| |||| || | | || |||||||| |||| ||| || | ||| || || ||
Sbjct 260368 CCA---ATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATA 260312
Query 153959 CATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACG 154016
| || || | || | ||| || || ||| | || ||| | || | |
Sbjct 260311 GAAAAGATCTCTGGCACGATGC--TCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAAC 260254
Query 154017 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTT---T 154073
| ||||||| | ||||| ||||| | ||||| ||| | ||||| ||| ||
Sbjct 260253 TCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCA 260194
Query 154074 CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123
|| |||||||| |||| ||| | | ||| ||||| || | | ||||||
Sbjct 260193 CCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGG 260144
>seq1431
Length=173026
Score = 120 bits (132), Expect = 3e-22
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || ||||| |||||||||||||| | |||| |||||||| ||||||||||| |
Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTC--T 151264
Query 138447 CATA--GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504
||| ||||| || || || ||||| |||| | | |||| ||| ||||| || ||
Sbjct 151263 GATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGT 151204
Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTC 138563
|| || || |||||||| ||| | || | |||| | ||| | || || | || |||
Sbjct 151203 GGAATTCCCTCTTTGTCC-TGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTC 151145
Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || | ||| | || || || || | |||||| ||||||||||||||
Sbjct 151144 AACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
>seq1094
Length=241507
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | ||||||||||||||||||||||| |
Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| | |||||| || | | |||| | ||| ||||| || || ||
Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|||||||||||||| |||||| || | | ||| | ||||||| | ||| |||
Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | |||||||| || || || || ||||| ||||||||
Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
>seq404
Length=684826
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||||||||||||| | | | |||||||| || |||||||||||| |
Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || | || || |||| | || | |||||||||||| || ||
Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| | || | ||| | | ||| | |||||| | | ||| ||
Sbjct 506910 ATGCCTTCCTTGTC-TTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGAC 506852
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | ||||| ||||||| || || || || || |||||
Sbjct 506851 TTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 105 bits (116), Expect = 7e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||||| || ||||| | | || || |||||||| ||||| ||
Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || ||| ||| || || || || || | | || | ||||||||||| || ||
Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||||||||| ||| |||| | ||||| | ||| | ||| || | | ||| |
Sbjct 506455 GATTCCTTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAA 506397
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||| | || | ||||||||||||| ||||||||||| || ||||||
Sbjct 506396 CCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||||||||||||| | | | |||||||| || |||||||||||| |
Sbjct 508780 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 508721
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || | |||||||| | | |||| | ||| || || || || ||
Sbjct 508720 AGTGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 508661
Query 138508 ATACCTTC 138515
||||||||
Sbjct 508660 ATACCTTC 508653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496187700102240
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