Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq404 154 1e-32 seq1431 136 3e-27 seq1094 116 3e-21 seq373 86.0 4e-12 >seq404 Length=684826 Score = 154 bits (170), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || ||||| | ||||| |||||||| || |||||||| Sbjct 506576 TGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA- 506518 Query 15008 TGAGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || ||| |||| |||||| | || ||||||||| | ||||| ||||||||||| Sbjct 506517 -GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGG 506459 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||| |||||||| ||||| ||||||| ||| ||| |||| || ||||| | || Sbjct 506458 TGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTC 506399 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| ||||||||||| |||| ||||||||||| |||||||| Sbjct 506398 AACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || || ||||| || ||||| |||||||| ||||| || ||| | Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCG--G 506745 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || ||||||| ||||| ||||||||| | |||||||||||||| || | Sbjct 506744 ACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGG 506685 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| ||||| ||||||| || ||| ||||||||||||| | ||| | Sbjct 506684 GAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAA 506625 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || ||||| || || | || || || || |||||||| Sbjct 506624 CTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 ||||||||||| |||||||| || || || |||||||| ||| || | | | ||| Sbjct 507015 AAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCT 506956 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || ||||| ||| | ||||||||||||||||| ||||| ||||||||||| Sbjct 506955 TCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 506896 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| ||| || |||| || || || | || || || | ||| |||||| Sbjct 506895 TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTT 506836 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || || || ||||||||| Sbjct 506835 TTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || || || ||||| || ||||| || || || ||||| ||| ||| || | |||| Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATC--TGACAATGTACGACCATCTT 508933 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | || ||||| |||||| | |||||||| || || || ||||| ||||||||||| Sbjct 508932 CCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 508873 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| || ||| || |||| || |||||| ||| || ||||| || ||||||| Sbjct 508872 GAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTT 508813 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || ||||| || || || || ||||||||| Sbjct 508812 TTCCAGTCAGGGTCTTGACGAAGATTTGCATA 508781 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| || || || || || || |||||||| || || ||| || | |||| Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCC--GACAATGTGCGACCATCTT 509389 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | || |||||||| || | |||||||| || || || ||||| ||||| || || Sbjct 509388 CCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTT 509329 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| || ||| ||||||| ||||| ||| || || || ||||| || | Sbjct 509328 GAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCT 509269 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||| ||| || || |||||||||||| Sbjct 509268 TTCCAGTCAAAGTCTTGACGAAAATTTGCATA 509237 >seq1431 Length=173026 Score = 136 bits (150), Expect = 3e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| ||||||| |||||||||||||| || || || |||||||||||||| | || Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGT--CT 151264 Query 15009 GAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || || | | | ||||| | ||||| || || |||| ||||| ||||| || | Sbjct 151263 GATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGT 151204 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||||||| || ||||| ||| ||| |||||| ||||||| ||||| || Sbjct 151203 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCA 151144 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | |||||||| || || || | |||||| |||||||| ||||| || Sbjct 151143 ACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq1094 Length=241507 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | || || || ||||| |||||||| || ||| || || | || | Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTC--TGACAAGGTGCGACCATCCT 166130 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||||||||| | |||||||| ||||| || ||| || ||||| ||||| Sbjct 166131 CCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTT 166190 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||| || ||| |||| ||||| ||| | ||||| || ||||||||||||| Sbjct 166191 GGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTT 166250 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| || || || || ||||| || ||||| ||| Sbjct 166251 TACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285 >seq373 Length=651167 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 90624 AATATTTCCTAAATCGCCAACGTGTCG-TTCA-ATGGCATTTGGTGCGCCGTGATCGCGT 90681 || ||| || ||||| ||||| ||||| ||| || ||| ||||| || || || Sbjct 261512 AACATTGCCCAAATCACCAACATGTCGGTTCTCATCGCAA--GGTGCACCATGTTCCTTA 261455 Query 90682 CCGGTGGGATTAAAATGTTCGCCCGCAGATGTGCAACCGTTAGTTGTGTCACCAAATTCG 90741 || ||||||| |||||| ||| ||||| |||| || || || |||||||||||||| Sbjct 261454 CCCTTGGGATTGAAATGTGGGCCGGCAGAAATGCAGCCATTGGTATTGTCACCAAATTCG 261395 Query 90742 TGCACATGAAAACCGTGCAAACCTTTTGGTAAA 90774 || ||||| ||||| || | ||| || || ||| Sbjct 261394 TGAACATGGAAACCATGTAGACCCTTGGGCAAA 261362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357339548479970