Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq404 154 1e-32
seq1431 136 3e-27
seq1094 116 3e-21
seq373 86.0 4e-12
>seq404
Length=684826
Score = 154 bits (170), Expect = 1e-32
Identities = 174/231 (75%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | || || ||||| | ||||| |||||||| || ||||||||
Sbjct 506576 TGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA- 506518
Query 15008 TGAGAATTCTCGC--GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
|| ||| |||| |||||| | || ||||||||| | ||||| |||||||||||
Sbjct 506517 -GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGG 506459
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||| |||||||| ||||| ||||||| ||| ||| |||| || ||||| | ||
Sbjct 506458 TGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTC 506399
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| ||||||||||| |||| ||||||||||| ||||||||
Sbjct 506398 AACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 129 bits (142), Expect = 4e-25
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | | || || ||||| || ||||| |||||||| ||||| || ||| |
Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCG--G 506745
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| ||| || ||||||| ||||| ||||||||| | |||||||||||||| || |
Sbjct 506744 ACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGG 506685
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||| ||||| ||||||| || ||| ||||||||||||| | ||| |
Sbjct 506684 GAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAA 506625
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || || ||||| || || | || || || || ||||||||
Sbjct 506624 CTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024
||||||||||| |||||||| || || || |||||||| ||| || | | | |||
Sbjct 507015 AAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCATCT 506956
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| || || ||||| ||| | ||||||||||||||||| ||||| |||||||||||
Sbjct 506955 TCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 506896
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||| ||| ||| || |||| || || || | || || || | ||| ||||||
Sbjct 506895 TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTT 506836
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || |||| || || || || |||||||||
Sbjct 506835 TTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803
Score = 111 bits (122), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| || || ||||| || ||||| || || || ||||| ||| ||| || | ||||
Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATC--TGACAATGTACGACCATCTT 508933
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| || ||||| |||||| | |||||||| || || || ||||| |||||||||||
Sbjct 508932 CCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTT 508873
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||| || ||| || |||| || |||||| ||| || ||||| || |||||||
Sbjct 508872 GAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTT 508813
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || ||||| || || || || |||||||||
Sbjct 508812 TTCCAGTCAGGGTCTTGACGAAGATTTGCATA 508781
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| || || || || || || |||||||| || || ||| || | ||||
Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCC--GACAATGTGCGACCATCTT 509389
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| || |||||||| || | |||||||| || || || ||||| ||||| || ||
Sbjct 509388 CCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTT 509329
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||||||| || ||| ||||||| ||||| ||| || || || ||||| || |
Sbjct 509328 GAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCT 509269
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || |||| ||| || || ||||||||||||
Sbjct 509268 TTCCAGTCAAAGTCTTGACGAAAATTTGCATA 509237
>seq1431
Length=173026
Score = 136 bits (150), Expect = 3e-27
Identities = 171/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| ||||||| |||||||||||||| || || || |||||||||||||| | ||
Sbjct 151321 GCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGT--CT 151264
Query 15009 GAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066
|| || | | | ||||| | ||||| || || |||| ||||| ||||| || |
Sbjct 151263 GATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGT 151204
Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
|||||||| || ||||| ||| ||| |||||| ||||||| ||||| ||
Sbjct 151203 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCA 151144
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| || | |||||||| || || || | |||||| |||||||| ||||| ||
Sbjct 151143 ACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
>seq1094
Length=241507
Score = 116 bits (128), Expect = 3e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|| ||||| | || || || ||||| |||||||| || ||| || || | || |
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTC--TGACAAGGTGCGACCATCCT 166130
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| |||||||||||||| | |||||||| ||||| || ||| || ||||| |||||
Sbjct 166131 CCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTT 166190
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||||| || ||| |||| ||||| ||| | ||||| || |||||||||||||
Sbjct 166191 GGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTT 166250
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
|||| || || || || ||||| || ||||| |||
Sbjct 166251 TACCGGTTAGGGTCTTGACAAAGATCTGCATTTTT 166285
>seq373
Length=651167
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/153 (74%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 90624 AATATTTCCTAAATCGCCAACGTGTCG-TTCA-ATGGCATTTGGTGCGCCGTGATCGCGT 90681
|| ||| || ||||| ||||| ||||| ||| || ||| ||||| || || ||
Sbjct 261512 AACATTGCCCAAATCACCAACATGTCGGTTCTCATCGCAA--GGTGCACCATGTTCCTTA 261455
Query 90682 CCGGTGGGATTAAAATGTTCGCCCGCAGATGTGCAACCGTTAGTTGTGTCACCAAATTCG 90741
|| ||||||| |||||| ||| ||||| |||| || || || ||||||||||||||
Sbjct 261454 CCCTTGGGATTGAAATGTGGGCCGGCAGAAATGCAGCCATTGGTATTGTCACCAAATTCG 261395
Query 90742 TGCACATGAAAACCGTGCAAACCTTTTGGTAAA 90774
|| ||||| ||||| || | ||| || || |||
Sbjct 261394 TGAACATGGAAACCATGTAGACCCTTGGGCAAA 261362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357339548479970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |