Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 131 2e-25
seq404 122 8e-23
seq1431 109 5e-19
>seq1090
Length=275775
Score = 131 bits (144), Expect = 2e-25
Identities = 931/1465 (64%), Gaps = 65/1465 (4%)
Strand=Plus/Minus
Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175
||| |||| ||||| | || ||||| || | || || || |||| ||| || ||||||
Sbjct 261186 GTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATG 261127
Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGAC 146235
|||| |||| || || | || || ||| | ||| ||||| ||| | |
Sbjct 261126 GGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCC 261067
Query 146236 CAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGG 146295
|||| ||| | |||| ||||| | || | |||| || || | | || |
Sbjct 261066 CAATCCCAGA---GATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTG 261010
Query 146296 AACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGATCTTG----GCCAGTTCGC 146350
|| ||||| | || | |||| |||||| ||||| |||||| |||| ||| |
Sbjct 261009 CTCACTGGGCT-TCCTGGATACGTTTCATAGGGACC----ATCTTGTTCAGCCAATTCAC 260955
Query 146351 AGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAG-TTGACGCTCCTG 146409
| || ||||||| ||| | |||| || || || || ||| | || | | |
Sbjct 260954 AACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATT-TGTTGATTCAATTTGAAG 260896
Query 146410 GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTAT 146468
||||||||||| |||||||| ||| || | || | | | ||||| | |||||| |
Sbjct 260895 GCCTCCTCGCTTTCGTAGGG-ATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGAC 260837
Query 146469 CCCGACACCAACGGGGCGGTGTTTCTTGTTAC-TGTTCGCAGCGCCCGCAGTGGGATAGT 146527
|| | |||| ||| || ||| | ||| | ||| | || ||||||| |||||
Sbjct 260836 ACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGG-ATAGT 260778
Query 146528 GGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCA 146587
|||| || ||||| ||||||||||| ||| | || | ||| | | ||||
Sbjct 260777 AGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATT 260718
Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647
| ||||||| ||||| || ||| || || |||| | | || |||||||
Sbjct 260717 TCTTAAAGTCAAAAGTTTT--TTCGGGCGTC-ACAAACATGTTCAGGCAAATGGAGGCCA 260661
Query 146648 AGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGC 146707
|||| || || || | || ||| | |||| | || || || | ||| | ||||
Sbjct 260660 AGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGC 260601
Query 146708 TGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGT 146764
|||| || ||| |||| | ||||| ||| ||||| ||| || || | ||||||
Sbjct 260600 TGCATTTAATGGTGCCAACATTTTGTTGATTACTT---TTGCGATTACAAGAGTCCTTAA 260544
Query 146765 AGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCTC 146824
| |||||||| || || ||||| || | || || | ||| | || |||| | |
Sbjct 260543 ATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGG--CAAACCAAAGCGC 260486
Query 146825 TGGC-CTTTACTTGTCTTTCGTACAGTTTATT--CTTTTCGTATTTCTCGTACAATATTT 146881
|| | ||| | || | | || || |||||||||||| ||||| | | |
Sbjct 260485 CTGCGCCTTAATGGT-TCTGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGT 260427
Query 146882 CAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941
|||| ||| | | || |||| || ||| | || | ||||| | || ||||
Sbjct 260426 CAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACC 260367
Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAG-GCCCAGCATC 147000
| || || || | ||| ||| |||||||||||| || |||||||| || || |
Sbjct 260366 AATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAA-- 260309
Query 147001 AAG-TCGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGT 147058
||| || | || | || || || ||| | || | | || | | | ||
Sbjct 260308 AAGATCTCTGGCACGATGC-TCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAA 260250
Query 147059 AAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTT---ACCGC 147115
| || |||| ||||||||| |||| ||| ||| | ||| || || || ||| |
Sbjct 260249 AGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCAC 260190
Query 147116 CCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGG 147175
||||||| |||| ||| | | |||||||| |||| |||||||| ||| | || ||
Sbjct 260189 CCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGG 260130
Query 147176 ATTTTG---TGGTGCCGT---TGTAT------TGAGCGCTGACGCTTTGCACGCTCAGCC 147223
| || | |||||| || | | ||||| | || || || | | |
Sbjct 260129 AGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGATTC 260070
Query 147224 CGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGT 147283
| | |||||| | || ||||||| ||| ||| | || | ||| | ||||| |
Sbjct 260069 CAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCT 260010
Query 147284 CGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGC 147343
| || || | ||| |||||||| ||| ||| ||| |||||| |||
Sbjct 260009 CAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGG 259950
Query 147344 CCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCAATTGAT 147400
| || ||||||| ||||| || || || || || || | ||| | || || ||
Sbjct 259949 CTGCAGCAAACAATGTGGGCGATGCATGGGTAAA-GTAACGCTCGGACA-ACCAGTT-AT 259893
Query 147401 ACGTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGC 147459
| ||||||||||| | || | ||| || || ||||| | | ||| || ||||| |||
Sbjct 259892 AAGTTTCAATGGC-CGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGC 259834
Query 147460 ATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGTC-AG 147518
|| || || || ||||| |||||| |||| | ||| ||||||||| | | || ||
Sbjct 259833 ATATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATAT-GAGCGTTCTAG 259775
Query 147519 AGTTTTGAAACCAAAGTACTTGTAG 147543
||| || || |||||||| ||||||
Sbjct 259774 AGTCTTAAATCCAAAGTAGTTGTAG 259750
>seq404
Length=684826
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| |||||||| | ||||| |||||||||||||||||||| |
Sbjct 506574 CCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGAC 506515
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || |||||| | ||||||||||| || || || ||
Sbjct 506514 AATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGG 506455
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGT-TGTTCGACGGTGTCCGTACTCTCGAC 127065
|| || || ||||| ||| ||| |||| | | ||| | ||| || | | ||| ||
Sbjct 506454 ATTCCTTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAAC 506396
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | ||||| || |||| ||||||||||| || ||||||
Sbjct 506395 CTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || ||||| | |||||||| || || || ||||| ||| |
Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || | ||| || || ||| | ||||| ||||| || || || ||
Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| |||||||| ||| | | |||| | | ||||| |||||||| | ||||||
Sbjct 506910 ATGCCTTCCTTGTCT-TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGAC 506852
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| ||| | |||||||| |||| || || || || || |||||
Sbjct 506851 TTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
>seq1431
Length=173026
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || |||||||| || ||||| | ||| || || ||||| || ||||| ||
Sbjct 151323 GCGCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCT 151264
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| ||| ||| ||| || ||||||||||| || | || || || || ||||| ||
Sbjct 151263 GATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGT 151204
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || ||||| |||||| || || ||| | | ||| | || || | |||
Sbjct 151203 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCA 151144
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| | || | || ||||| || | |||||| ||||||||||||||
Sbjct 151143 ACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475429225242080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |