Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1090 131 2e-25 seq404 122 8e-23 seq1431 109 5e-19 >seq1090 Length=275775 Score = 131 bits (144), Expect = 2e-25 Identities = 931/1465 (64%), Gaps = 65/1465 (4%) Strand=Plus/Minus Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| |||| ||||| | || ||||| || | || || || |||| ||| || |||||| Sbjct 261186 GTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATG 261127 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGAC 146235 |||| |||| || || | || || ||| | ||| ||||| ||| | | Sbjct 261126 GGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCC 261067 Query 146236 CAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGG 146295 |||| ||| | |||| ||||| | || | |||| || || | | || | Sbjct 261066 CAATCCCAGA---GATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATACCTTTG 261010 Query 146296 AACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGATCTTG----GCCAGTTCGC 146350 || ||||| | || | |||| |||||| ||||| |||||| |||| ||| | Sbjct 261009 CTCACTGGGCT-TCCTGGATACGTTTCATAGGGACC----ATCTTGTTCAGCCAATTCAC 260955 Query 146351 AGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAG-TTGACGCTCCTG 146409 | || ||||||| ||| | |||| || || || || ||| | || | | | Sbjct 260954 AACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATT-TGTTGATTCAATTTGAAG 260896 Query 146410 GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTAT 146468 ||||||||||| |||||||| ||| || | || | | | ||||| | |||||| | Sbjct 260895 GCCTCCTCGCTTTCGTAGGG-ATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGAC 260837 Query 146469 CCCGACACCAACGGGGCGGTGTTTCTTGTTAC-TGTTCGCAGCGCCCGCAGTGGGATAGT 146527 || | |||| ||| || ||| | ||| | ||| | || ||||||| ||||| Sbjct 260836 ACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGG-ATAGT 260778 Query 146528 GGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCA 146587 |||| || ||||| ||||||||||| ||| | || | ||| | | |||| Sbjct 260777 AGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATT 260718 Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647 | ||||||| ||||| || ||| || || |||| | | || ||||||| Sbjct 260717 TCTTAAAGTCAAAAGTTTT--TTCGGGCGTC-ACAAACATGTTCAGGCAAATGGAGGCCA 260661 Query 146648 AGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGC 146707 |||| || || || | || ||| | |||| | || || || | ||| | |||| Sbjct 260660 AGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGC 260601 Query 146708 TGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGT 146764 |||| || ||| |||| | ||||| ||| ||||| ||| || || | |||||| Sbjct 260600 TGCATTTAATGGTGCCAACATTTTGTTGATTACTT---TTGCGATTACAAGAGTCCTTAA 260544 Query 146765 AGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAATCTC 146824 | |||||||| || || ||||| || | || || | ||| | || |||| | | Sbjct 260543 ATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGG--CAAACCAAAGCGC 260486 Query 146825 TGGC-CTTTACTTGTCTTTCGTACAGTTTATT--CTTTTCGTATTTCTCGTACAATATTT 146881 || | ||| | || | | || || |||||||||||| ||||| | | | Sbjct 260485 CTGCGCCTTAATGGT-TCTGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGT 260427 Query 146882 CAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941 |||| ||| | | || |||| || ||| | || | ||||| | || |||| Sbjct 260426 CAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACC 260367 Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAG-GCCCAGCATC 147000 | || || || | ||| ||| |||||||||||| || |||||||| || || | Sbjct 260366 AATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAA-- 260309 Query 147001 AAG-TCGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGT 147058 ||| || | || | || || || ||| | || | | || | | | || Sbjct 260308 AAGATCTCTGGCACGATGC-TCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAA 260250 Query 147059 AAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTT---ACCGC 147115 | || |||| ||||||||| |||| ||| ||| | ||| || || || ||| | Sbjct 260249 AGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCAC 260190 Query 147116 CCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGG 147175 ||||||| |||| ||| | | |||||||| |||| |||||||| ||| | || || Sbjct 260189 CCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGG 260130 Query 147176 ATTTTG---TGGTGCCGT---TGTAT------TGAGCGCTGACGCTTTGCACGCTCAGCC 147223 | || | |||||| || | | ||||| | || || || | | | Sbjct 260129 AGGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGATTC 260070 Query 147224 CGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGT 147283 | | |||||| | || ||||||| ||| ||| | || | ||| | ||||| | Sbjct 260069 CAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCT 260010 Query 147284 CGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGC 147343 | || || | ||| |||||||| ||| ||| ||| |||||| ||| Sbjct 260009 CAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGG 259950 Query 147344 CCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCAATTGAT 147400 | || ||||||| ||||| || || || || || || | ||| | || || || Sbjct 259949 CTGCAGCAAACAATGTGGGCGATGCATGGGTAAA-GTAACGCTCGGACA-ACCAGTT-AT 259893 Query 147401 ACGTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGC 147459 | ||||||||||| | || | ||| || || ||||| | | ||| || ||||| ||| Sbjct 259892 AAGTTTCAATGGC-CGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGC 259834 Query 147460 ATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGTC-AG 147518 || || || || ||||| |||||| |||| | ||| ||||||||| | | || || Sbjct 259833 ATATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATAT-GAGCGTTCTAG 259775 Query 147519 AGTTTTGAAACCAAAGTACTTGTAG 147543 ||| || || |||||||| |||||| Sbjct 259774 AGTCTTAAATCCAAAGTAGTTGTAG 259750 >seq404 Length=684826 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||||||| | ||||| |||||||||||||||||||| | Sbjct 506574 CCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGAC 506515 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| | ||||||||||| || || || || Sbjct 506514 AATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGG 506455 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGT-TGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || ||||| ||| ||| |||| | | ||| | ||| || | | ||| || Sbjct 506454 ATTCCTTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAAC 506396 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | ||||| || |||| ||||||||||| || |||||| Sbjct 506395 CTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || ||||| | |||||||| || || || ||||| ||| | Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 506971 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| || || ||| | ||||| ||||| || || || || Sbjct 506970 AGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGA 506911 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| | | |||| | | ||||| |||||||| | |||||| Sbjct 506910 ATGCCTTCCTTGTCT-TGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGAC 506852 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||| | |||||||| |||| || || || || || ||||| Sbjct 506851 TTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 >seq1431 Length=173026 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || |||||||| || ||||| | ||| || || ||||| || ||||| || Sbjct 151323 GCGCCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCT 151264 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | ||| ||| ||| || ||||||||||| || | || || || || ||||| || Sbjct 151263 GATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGT 151204 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||| |||||| || || ||| | | ||| | || || | ||| Sbjct 151203 GGAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCA 151144 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || | || ||||| || | |||||| |||||||||||||| Sbjct 151143 ACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475429225242080