Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1090 178 1e-39 seq404 134 1e-26 seq1431 114 1e-20 seq1094 109 5e-19 >seq1090 Length=275775 Score = 178 bits (196), Expect = 1e-39 Identities = 928/1464 (63%), Gaps = 58/1464 (4%) Strand=Plus/Plus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCA 123291 ||||| | |||| | |||||| | | || |||| || ||||| || |||||| Sbjct 260145 CCATGTTAAGAGTATTCAATAATGTTGCACGCTACGTTGATCAGGGTGGTGGCAAACGTC 260204 Query 123292 AAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATT 123351 || || | || ||||| | ||||| ||||| || | | || ||||| ||| Sbjct 260205 CTGGTGCATTTGCCATCTACTTGGAACCTTGGCATTCGGACATCTTTGAGTTTTTGGATT 260264 Query 123352 TAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGG 123411 ||||| || | || ||||| | ||| | ||| | || || ||| | ||| Sbjct 260265 TAAAAAAGAATACCGGCAAAGAAGAGCATCGTGCCAGAGATCTTTTCTATGCTCTTTGGA 260324 Query 123412 TACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCG 123471 |||| ||||||||||||||||| || |||| |||||| ||||| || |||||||| Sbjct 260325 TACCAGATTTGTTTATGCGACGTGTGGAAGAAAACGGCGATTGGTCCCTAATGTGTCCTC 260384 Query 123472 ATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAAT 123531 | ||||| || | || || | || | | |||||| || | |||| ||| Sbjct 260385 ACAAATGTCCAGGACTCCATGAGGTCTGGGGTGAAGAATTTGACAAGCTTTACGAAAAAT 260444 Query 123532 ACGAG-----CGCGAAGGCAAACAGGTT-AGTCAGGTTCCGGCACGT-GATTTGTTCAAA 123584 |||| || || || ||||| | | ||| | ||| | | | |||| Sbjct 260445 ACGAAAAGGCCGGCAAAGCTAACAGAACCATTAAGGCGCAGGCGCTTTGGTTTGCC---- 260500 Query 123585 TTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644 ||||| ||| | ||||| ||||| ||||| || |||||||| | || ||| | || Sbjct 260501 ---ATTATAGAATCCCAAGTAGAAACTGGAACTCCCTACATGCTATTTAAGGACTCTTGT 260557 Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 || | |||| ||||| || | || || || ||||| || ||| | ||| | ||| Sbjct 260558 AATCGCAAAAGTAATCAACAAAATGTTGGCACCATTAAATGCAGCAATTTGTGCACAGAA 260617 Query 123705 ATTATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG 123762 || | ||||| |||| | ||| || | || || || || ||||| || |||||| Sbjct 260618 ATCGTTGAATATTCAGCACCG--GATGAAATCGCTGTCTGCAACTTGGCCTCCATTTGCC 260675 Query 123763 TGAA-----TCGTTGCGTC-GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAA 123816 |||| | || || | ||||| ||||| | || | | | || || Sbjct 260676 TGAACATGTTTGTGACGCCCGAAAAAA---CTTTTGACTTTAAGAAATTGAAGACAGTAT 260732 Query 123817 CAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGG 123876 | ||| || | ||| | |||||||| || ||||| || | ||||| || ||| Sbjct 260733 CTAAAGTCGTGGCGCGCAATCTCAACAAAATCATAGATGTCAACTACTATCCACTGCAGG 260792 Query 123877 AAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCG 123936 | || | |||||| | | ||| | || | || | || | || || || |||| Sbjct 260793 AGGCCAGAAAATCTAATCTCAGACATCGTCCCATTGGCATTGGTGTCCAGGGTTTTGCCG 260852 Query 123937 ACGCGTTTGTAATGCT---GCGCATGCCGTACGAAAGCGACGAAGCA---AAGTTGCTTA 123990 | | | |||| || ||| || ||||||||||| || || || ||| | Sbjct 260853 ATAC---TCTAATTCTCATGCGTTATCCCTACGAAAGCGAGGAGGCCTTCAAATTG---A 260906 Query 123991 ATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGA 124050 || |||||| ||||| ||||| || || |||||||| || || || ||| | || Sbjct 260907 ATCAACAAATATTTGAAACTATTTACTATGGTGCTTTGGAAGCAAGTTGTGAATTGGCTG 260966 Query 124051 AAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGT 124110 || | || | || |||| || | || ||||| | |||| |||||| | || | Sbjct 260967 AACAAGATGGTCCCTATGAAACGTATCCAGGAAGCCCAGTGAGCAAAGGTATACTTCAAT 261026 Query 124111 ACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCA 124170 | ||||||||||| || || || | ||||| ||| | |||| || | | Sbjct 261027 ATGACATGTGGAACAAGGTGCCCACCGATCTCTGGGATTGGGCTGCCCTAAAGGAAAGAA 261086 Query 124171 TATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTG 124230 | | | || ||| | || || |||||| | |||| |||||| ||||| | |||| Sbjct 261087 TTGCCAAACATGGTGTACGCAATTCGCTGCTCCTGGCCCCCATGCCCACGGCTTCGACTG 261146 Query 124231 CTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACT--AACAATTTGTACGTGCG 124288 | |||||| | || ||||| ||| | ||||| |||| |||| || |||| ||| || Sbjct 261147 CCCAAATTATGGGCAACAATGAAGCTTTCGAACCGTACACTTCAAACATTTATAC--ACG 261204 Query 124289 ACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGC 124348 || || || | || || || | | | |||||||||||| | | || ||| | Sbjct 261205 CCGTGTACTATCGGGTGAATTCAACATTGTCAATCATCATTTGCTTAAAGATTTGACCGA 261264 Query 124349 GTTAAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCA 124408 | | | | ||||| | ||| || |||||||| | | ||||| | | || Sbjct 261265 ACTCGACCTATGGGATGAGGAAATGAAAAATAAAATTATTTCTAGCCGTGGCTCCATACA 261324 Query 124409 GCGCATCGCTTCGATTCCGGAACACGT-CAAGCAACTGTACAAAACCGTGTGGGAAA--- 124464 ||||| ||||| || | | | || | || |||||||| || ||||||| Sbjct 261325 AAACATCGAGGAAATTCCCAAAGAAATACGAG-AGCTCTACAAAACGGTATGGGAAATTT 261383 Query 124465 -TGAAAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGT 124523 || || || |||| ||||||| | || || || || | || || |||||| Sbjct 261384 CTGTCAAGACCACCATTA----AAATGGCTGCTGATCGTGGAGCTTTCATTGACCAAAGT 261439 Query 124524 CAATCTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATG 124583 ||||| || || | ||| || || |||| ||||| | |||| ||||| | Sbjct 261440 CAATCCTTCAATATACATGTGGCCGAGCCCAACTACGGCAAATTGACTTCAATACATTTC 261499 Query 124584 CACGCGTGGAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGC 124642 | | |||| ||| || || || |||||||||||||| || ||||| ||||| || || Sbjct 261500 TATTCCTGGA-AAGCTGGCCTTAAGACGGGCATGTATTATTTGAGAACTAAACCAGCTGC 261558 Query 124643 CGATGCCATTCAATTTACCGTCGA 124666 | |||| || ||||| || || || Sbjct 261559 CAATGCTATACAATTCACTGTTGA 261582 >seq404 Length=684826 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| |||| ||| || || || ||||| ||||| || || ||| Sbjct 507033 ATACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 506974 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | || ||| ||||| || || || ||| | ||||| || || ||||| | Sbjct 506973 --GACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTG 506916 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || |||||||| || ||| | ||| | |||||| |||| || Sbjct 506915 GGGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCT 506856 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || | |||||||| || | || || || || |||||||| Sbjct 506855 CGACTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| | ||| || ||||||||||| ||||| || || || | Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCC--G 509407 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| ||||| ||||| || || | ||||| |||||||| || || | Sbjct 509406 ACAATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGG 509347 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 ||||||||||||||||||||||||| |||| ||||| ||| || || | || | Sbjct 509346 GAATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCA 509287 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | |||| || || || || | ||| || || ||||||||||| Sbjct 509286 CTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 122 bits (134), Expect = 8e-23 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || ||||| || ||||||||||||| ||||| | | || ||| ||||| | Sbjct 508984 TGGAGGGTCGATTCTTTCTGGATATTATAAT--CTGACAATGTACGACCATCTTCCAACT 508927 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || ||| | ||||| |||||||| || || ||||| ||||| || |||||||| | Sbjct 508926 GTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCT 508867 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||||| ||| | ||| ||||| | |||||||| | ||| | ||||| || | Sbjct 508866 TAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTTCCAG 508807 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || |||||||| Sbjct 508806 TCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| || || ||||| || ||||| || || || |||| | || ||| | Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTC--TGACAAAGTGCGACCATCTT 509161 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||||||| || || ||| | || || ||||| ||||| || ||||||||||||||||||| Sbjct 509160 CCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTT 509101 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||| | ||| | || ||||| | |||||||| | || | |||| Sbjct 509100 GAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTT 509041 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || || || |||||||| Sbjct 509040 TTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || |||||||||||||||||||||||| | ||| ||| |||| || Sbjct 506323 ATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCCAGCTG 506264 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | ||||| ||||| || || || ||||||||||||||||||||||| || Sbjct 506263 TTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTT 506204 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | ||| | ||| || || | || || || | || | || ||||| || Sbjct 506203 GGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTGCCAGT 506144 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 506143 TAATGTCTTCACGAAGATCTGCAT 506120 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||||| || ||||| ||||| ||||| ||||| Sbjct 506577 ATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 506518 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | || || | || || || ||| | |||||||| || ||||| | Sbjct 506517 --GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTG 506460 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || |||||||| ||||||||||| ||| | ||| | ||| || |||| || Sbjct 506459 GTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCT 506400 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | || | ||||| || || | ||||||||||| |||||||| Sbjct 506399 CAACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| || || ||||| ||||| || ||||| ||| ||| | | | || |||||| Sbjct 506779 ATGTAGTGTAGATTCTTTTTGAATGTTATAGTCG--GACAATGTACGTCCGTCTTCCAAT 506722 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | ||||| || || || || || ||||| |||||||| ||||||||| Sbjct 506721 TGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATT 506662 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || || | ||||| || || |||| || ||||| || || | ||||| || Sbjct 506661 TTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCC 506602 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || || || |||||||| Sbjct 506601 GTTAATGTCTTAACGAATATTTGCAT 506576 >seq1431 Length=173026 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186 ||| |||| ||| ||||||||||||||||| || || || || | | || || | || Sbjct 151306 CAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAAC-GTACGACCAT 151248 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | || | |||||||| || |||| || ||||| || || || ||||| || ||||| | Sbjct 151247 CTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTGT 151188 Query 45247 CTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 | ||||| || || | ||||| || || || | ||| ||||| || |||| | Sbjct 151187 CCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATGG 151128 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| |||| |||||| |||||||| |||||| Sbjct 151127 TCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATC 151093 >seq1094 Length=241507 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAGAATCGTCCAAT 45194 ||||| || || |||||||| || || || || |||| ||| | ||| |||||| Sbjct 166078 ATGCAAAGTCGACTCCTTTTGAATGTTGTAGTC--TGACAAGGTGCGACCATCCTCCAAT 166135 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | ||||| ||||| || || || || || |||||||| ||||| ||| Sbjct 166136 TGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATT 166195 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| ||| | |||||||||| ||| || || | |||| ||||| ||| Sbjct 166196 TTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTACCG 166255 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| || ||||| Sbjct 166256 GTTAGGGTCTTGACAAAGATCTGCAT 166281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451935162218320