Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq540 138 1e-27 >seq540 Length=484570 Score = 138 bits (152), Expect = 1e-27 Identities = 290/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 ||||||| || ||||| |||| || || || | ||||| |||| |||||||||| Sbjct 95577 AACCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACC 95636 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | |||||||||| | ||||||||| | || | | || ||| |||||| | Sbjct 95637 AAACTGGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTT--TTGTGAAGATGTACCTCGTTTGAGA 175923 ||| ||| || |||| || | || || | |||| |||||||| | | || Sbjct 95697 GATGAAAAATCATACGGGC--CAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAG- 95753 Query 175924 CGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 175982 |||| || |||||||| | | | || || || ||||| | ||||| || || |||| Sbjct 95754 CGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGA 95813 Query 175983 TATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACT 176041 ||||||| ||||||| ||||| | ||||| || ||||| || || || || || ||| Sbjct 95814 TATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGC-AGTGAAACT 95872 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 ||||||||||||||||| ||| | || | || | | | | || || ||||||| | Sbjct 95873 TCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACC 95932 Query 176102 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGG 176161 ||| |||| || | |||||| | | |||| ||||| | || |||||||| | Sbjct 95933 TCACGCTTGTCATTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAG 95992 Query 176162 CCGTC 176166 || || Sbjct 95993 CCATC 95997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613414851828720