Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq404 114 3e-20
seq1431 104 6e-17
seq1094 87.8 4e-12
>seq404
Length=684826
Score = 114 bits (126), Expect = 3e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||||| || || || || |||| ||||||||| | |||||| | ||||||
Sbjct 509221 AGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCT 509162
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| ||||| ||||||||||| | || || ||||| || ||| |||||| ||
Sbjct 509161 TCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCT 509102
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||| ||| || ||||| ||||| || || | || ||| || || || ||||| ||
Sbjct 509101 TGAAT-TTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGT 509043
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || |||||
Sbjct 509042 TTTTCCTGTCAGGGTCTTGACGAAGATTTG 509013
Score = 104 bits (114), Expect = 6e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| || || || |||||||||| || || || | ||| || | |||||||||||||||
Sbjct 506322 TGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCCAGCTGT 506263
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| ||||| ||||| | ||| || || || ||| ||| |||||| || ||||||||
Sbjct 506262 TTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTG 506203
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
|| || ||| | ||| || | | ||| || ||||| ||||| ||||| || ||
Sbjct 506202 GCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTT 506143
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| || ||||| || || ||
Sbjct 506142 AATGTCTTCACGAAGATCTG 506123
>seq1431
Length=173026
Score = 104 bits (114), Expect = 6e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| || || || |||||||| | ||||||||| | || || | |||||||| |||||
Sbjct 151296 TGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCATCTTCAAGCTGT 151237
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|||||||| || || | ||| || || || || |||||| ||| |||||||||||
Sbjct 151236 TTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTGTCCTGAATCTTG 151177
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| || ||| | || || | | || || || | ||| || ||||| |||||
Sbjct 151176 GCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATGGTCTTGCCCGTT 151117
Query 199607 AGAGTTTTCACAAAAATTTG 199626
| |||||| |||||||| ||
Sbjct 151116 AAAGTTTTGACAAAAATCTG 151097
>seq1094
Length=241507
Score = 87.8 bits (96), Expect = 4e-12
Identities = 156/227 (69%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || | || | ||||||||||||||| | ||||||||| | ||| ||
Sbjct 166061 CGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTG 166120
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||| || || || || ||||| | ||| || || || || || |||
Sbjct 166121 CGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCT 166180
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || || || ||| || ||| | ||||| | | ||||| |||||
Sbjct 166181 TCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAG 166240
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || ||||| || || || || ||||| || || ||||||
Sbjct 166241 GTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTG---CATTTT 166284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178739706396814
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |