Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq404 114 3e-20 seq1431 104 6e-17 seq1094 87.8 4e-12 >seq404 Length=684826 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||| || || || || |||| ||||||||| | |||||| | |||||| Sbjct 509221 AGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCT 509162 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||||||||| | || || ||||| || ||| |||||| || Sbjct 509161 TCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCT 509102 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || ||||| ||||| || || | || ||| || || || ||||| || Sbjct 509101 TGAAT-TTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGT 509043 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 509042 TTTTCCTGTCAGGGTCTTGACGAAGATTTG 509013 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||||| || || || | ||| || | ||||||||||||||| Sbjct 506322 TGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCCAGCTGT 506263 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||| | ||| || || || ||| ||| |||||| || |||||||| Sbjct 506262 TTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTG 506203 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | ||| || | | ||| || ||||| ||||| ||||| || || Sbjct 506202 GCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTT 506143 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || ||||| || || || Sbjct 506142 AATGTCTTCACGAAGATCTG 506123 >seq1431 Length=173026 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||| | ||||||||| | || || | |||||||| ||||| Sbjct 151296 TGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCATCTTCAAGCTGT 151237 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||| || || | ||| || || || || |||||| ||| ||||||||||| Sbjct 151236 TTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTGTCCTGAATCTTG 151177 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | || || | | || || || | ||| || ||||| ||||| Sbjct 151176 GCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATGGTCTTGCCCGTT 151117 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| |||||||| || Sbjct 151116 AAAGTTTTGACAAAAATCTG 151097 >seq1094 Length=241507 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || | ||||||||||||||| | ||||||||| | ||| || Sbjct 166061 CGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTG 166120 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| || || || || ||||| | ||| || || || || || ||| Sbjct 166121 CGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCT 166180 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || || || ||| || ||| | ||||| | | ||||| ||||| Sbjct 166181 TCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAG 166240 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || ||||| || || || || ||||| || || |||||| Sbjct 166241 GTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTG---CATTTT 166284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178739706396814