Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq404 109 4e-19 seq1094 104 2e-17 >seq404 Length=684826 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||||||| | || ||| ||||| ||||||||||||| Sbjct 506347 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGA 506288 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||| ||||| ||| |||| || ||||| || ||||| | || Sbjct 506287 CAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGG 506228 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||| || || || ||||| | | | || || | | ||| || Sbjct 506227 AATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAAC 506168 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || ||||| || || |||||||||||||| Sbjct 506167 CTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || ||||||||| || ||||| |||| | Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || |||||||| || || | ||||| |||||||| ||||| | ||| Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| |||| | ||| || || | ||| || Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| || || ||||| |||||||| || || ||||| || |||||| Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | |||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || | || || | || || || | ||||| || ||||| || || | || Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| ||||| ||||| | | | || || | || || Sbjct 506455 GATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAAC 506396 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || |||||||| || || |||||||| ||||| |||||| Sbjct 506395 CTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 >seq1094 Length=241507 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| ||||||||||||||||| || ||||| || || || || | | Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| || |||| || ||||| || ||||| | || Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | ||||| | || || Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| |||||||| |||| || || || ||||||||||| Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347318619386186