Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq404 109 4e-19
seq1094 104 2e-17
>seq404
Length=684826
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | ||| || |||||||| | || ||| ||||| |||||||||||||
Sbjct 506347 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGA 506288
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| ||| |||| |||| ||||| ||| |||| || ||||| || ||||| | ||
Sbjct 506287 CAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGG 506228
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| ||||||||| || || || ||||| | | | || || | | ||| ||
Sbjct 506227 AATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAAC 506168
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || || || || ||||| || || ||||||||||||||
Sbjct 506167 CTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | || ||||||||| || ||||| |||| |
Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| | || |||||||| || || | ||||| |||||||| ||||| | |||
Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| ||||| |||| | ||| || || | ||| ||
Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|||| || || ||||| |||||||| || || ||||| || ||||||
Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || || | |||| |||||||||||| || ||||||||| ||||| ||||| |
Sbjct 506575 GCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 506516
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| || | || || | || || || | ||||| || ||||| || || | ||
Sbjct 506515 CAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGG 506456
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| ||||||||||| ||||| ||||| | | | || || | || ||
Sbjct 506455 GATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAAC 506396
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || |||||||| || || |||||||| ||||| ||||||
Sbjct 506395 CTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
>seq1094
Length=241507
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| ||||||||||||||||| || ||||| || || || || | |
Sbjct 166055 CCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGAC 166114
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||||||||| || |||| || ||||| || ||||| | ||
Sbjct 166115 AAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 166174
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| ||||| || | | | | ||||| | || ||
Sbjct 166175 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACC 166234
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| ||||| |||||||| |||| || || || |||||||||||
Sbjct 166235 TCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347318619386186
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |