Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq305 217 1e-51
seq404 136 4e-27
seq1094 109 5e-19
seq1431 93.3 4e-14
>seq305
Length=710094
Score = 217 bits (240), Expect = 1e-51
Identities = 389/565 (69%), Gaps = 16/565 (3%)
Strand=Plus/Plus
Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930
||||||| || ||| |||||||| |||||| || |||||||| || ||||| | ||
Sbjct 408524 TGCACCAGATACTTAAACATCAATACAGCAAAATCACAATGCAAACCTTCGTCACGCGAT 408583
Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990
|| || |||||| ||| || ||||||||||| ||||| ||||| || | ||| || |||
Sbjct 408584 ATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATG 408643
Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050
| ||| |||||||| ||||| | ||| || || || || ||||| | | || ||
Sbjct 408644 GAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCA 408703
Query 133051 CCGAACGTGGC----TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTT 133106
|| || | || | | || | ||||| || ||||| || || ||| |||
Sbjct 408704 CCAAAATTAGCAGAATCCGATGAT----ATCCATGACAAAGCCCAATCAGCTTTTCTTTT 408759
Query 133107 GACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG--AGGAACGC 133164
|| ||||| ||||| ||||| || || ||| ||| | | | | || |
Sbjct 408760 AACAGCTGGCATAGTTTCAATGGCATTGAATAAATA----TTCACGTTGGTCACGATCTT 408815
Query 133165 --ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222
| |||||||| || || | |||||||||||||| || |||||||| || || |
Sbjct 408816 TAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCT 408875
Query 133223 GAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCA 133282
| ||||| || ||||| || || || || ||||| ||||||| || | |||||| |
Sbjct 408876 GGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTGAGAAAATCTCTCGACAA 408935
Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342
|||| || || || ||||| ||| ||| || || || |||| ||| || |||||||
Sbjct 408936 GATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAAT 408995
Query 133343 GGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402
| || ||||| | | ||||||||| | | || || ||||| ||||| ||||
Sbjct 408996 ATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCT 409055
Query 133403 CGACGGTCCAAAACGACGCCTCGGC 133427
| || |||||||| || ||||| ||
Sbjct 409056 CAACAGTCCAAAATGATGCCTCAGC 409080
>seq404
Length=684826
Score = 136 bits (150), Expect = 4e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || ||||||||||||||| |||| |||||| | |
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | ||||| | |||| || || | ||||| || || |||||| | |||||
Sbjct 506864 GACACCATCGAAAACG-TGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 506922
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | |||| ||| ||||| ||| |||| || | || || || |||||||||
Sbjct 506923 ACAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAA 506982
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| | || || ||||| || |||||
Sbjct 506983 CATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGT 507019
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || |||||||| | || || |||||||||||| | || || ||| | |
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | ||| |||||| ||||| | |||||||| ||||| || | ||||||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| ||||| || |||| ||| || | || |||||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| ||||| ||| | || |||||||||| ||||
Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCG 506562
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| || || | ||||| ||||| ||||| | || || || | |
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| |||| | ||||| | |||||||| || |||||| | || |||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| || |||| |||| || || | |||||| |||
Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| ||||| ||| | || || |||||||| || |||
Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGTCCTACGT 506791
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || ||||||||||| | || ||||| | ||
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | ||| | |||| ||||| | || ||||| || |||||| | ||||||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | ||| ||||| || |||| || | ||||| | |||||||||
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| || ||| | || || ||||| || || |||
Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGT 509225
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || | || ||||| |||||||| | || || || ||
Sbjct 506117 AATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCC 506176
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | | | ||| |||||| || || | || ||||| || ||||| | ||
Sbjct 506177 TCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGAT 506236
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
||||| || | || | || || ||||||||||| || | || ||| | ||| ||
Sbjct 506237 CAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTAT 506296
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| |||||||||||| | || || |||||||| || |||
Sbjct 506297 AATATCCAAAAGGAATCTACACTTCATTTGGTTCTTCGT 506335
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || ||||||||||| | || ||||| | ||
Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841
Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | || ||||| | |||| || || | ||||| || || |||||| | || ||
Sbjct 508842 GATACCATTGAAAACG-TCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCA 508900
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| || | || | ||| || |||||| |||| || | || || | || || ||
Sbjct 508901 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAA 508960
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| || ||| |||| || || ||||| || |||
Sbjct 508961 TATCCAGAAAGAATCGACCCTCCACTTGGTACTCCGT 508997
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || || || | || || || || |
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | ||| | || | ||||| | || ||||| || |||||| | || ||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || ||||||||| |||| || | ||||| | |||||||||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||| | || || ||||||||||| |||
Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGT 509453
>seq1094
Length=241507
Score = 109 bits (120), Expect = 5e-19
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296
|| ||||||||| || || || || || || || || |||||||| ||| | || || ||
Sbjct 166288 TAGAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGA 166229
Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356
| | |||||| | ||| | || | ||||||| |||||||| || || || |
Sbjct 166228 GCCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACC 166169
Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416
|| ||||| || | || | || |||||||| |||| || | |||||| | ||
Sbjct 166168 AGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGA 166109
Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||||| |||||||| |||| |||||||||| || |||
Sbjct 166108 CTACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGT 166066
>seq1431
Length=173026
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || ||||| | |||||||| ||||| || | || || ||| |
Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | | ||| | || | || || | ||||||||||||||||| | ||
Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
||||| || | || | || || |||||||| || || | || || | ||||||
Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||||||| | ||||| ||||| || |||| ||| | || |||
Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGGC 151321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500097511489280
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