Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq305 217 1e-51 seq404 136 4e-27 seq1094 109 5e-19 seq1431 93.3 4e-14 >seq305 Length=710094 Score = 217 bits (240), Expect = 1e-51 Identities = 389/565 (69%), Gaps = 16/565 (3%) Strand=Plus/Plus Query 132871 TGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAA 132930 ||||||| || ||| |||||||| |||||| || |||||||| || ||||| | || Sbjct 408524 TGCACCAGATACTTAAACATCAATACAGCAAAATCACAATGCAAACCTTCGTCACGCGAT 408583 Query 132931 ATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATG 132990 || || |||||| ||| || ||||||||||| ||||| ||||| || | ||| || ||| Sbjct 408584 ATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATG 408643 Query 132991 GCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCG 133050 | ||| |||||||| ||||| | ||| || || || || ||||| | | || || Sbjct 408644 GAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCA 408703 Query 133051 CCGAACGTGGC----TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTT 133106 || || | || | | || | ||||| || ||||| || || ||| ||| Sbjct 408704 CCAAAATTAGCAGAATCCGATGAT----ATCCATGACAAAGCCCAATCAGCTTTTCTTTT 408759 Query 133107 GACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG--AGGAACGC 133164 || ||||| ||||| ||||| || || ||| ||| | | | | || | Sbjct 408760 AACAGCTGGCATAGTTTCAATGGCATTGAATAAATA----TTCACGTTGGTCACGATCTT 408815 Query 133165 --ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTT 133222 | |||||||| || || | |||||||||||||| || |||||||| || || | Sbjct 408816 TAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCT 408875 Query 133223 GAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCA 133282 | ||||| || ||||| || || || || ||||| ||||||| || | |||||| | Sbjct 408876 GGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTGAGAAAATCTCTCGACAA 408935 Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342 |||| || || || ||||| ||| ||| || || || |||| ||| || ||||||| Sbjct 408936 GATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAAT 408995 Query 133343 GGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 | || ||||| | | ||||||||| | | || || ||||| ||||| |||| Sbjct 408996 ATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCT 409055 Query 133403 CGACGGTCCAAAACGACGCCTCGGC 133427 | || |||||||| || ||||| || Sbjct 409056 CAACAGTCCAAAATGATGCCTCAGC 409080 >seq404 Length=684826 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||||||||||||| |||| |||||| | | Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | |||| || || | ||||| || || |||||| | ||||| Sbjct 506864 GACACCATCGAAAACG-TGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 506922 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| ||| ||||| ||| |||| || | || || || ||||||||| Sbjct 506923 ACAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAA 506982 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||||| || ||||| Sbjct 506983 CATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGT 507019 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| | || || |||||||||||| | || || ||| | | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| |||||| ||||| | |||||||| ||||| || | |||||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || |||| ||| || | || ||||| Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| ||| | || |||||||||| |||| Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCG 506562 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || | ||||| ||||| ||||| | || || || | | Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||| | ||||| | |||||||| || |||||| | || ||| Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| || |||| |||| || || | |||||| ||| Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || || |||||||| || ||| Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGTCCTACGT 506791 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || ||||| | || Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | || ||||| || |||||| | |||||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| ||||| || |||| || | ||||| | ||||||||| Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || || ||||| || || ||| Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGT 509225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | || ||||| |||||||| | || || || || Sbjct 506117 AATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCC 506176 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| |||||| || || | || ||||| || ||||| | || Sbjct 506177 TCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGAT 506236 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || || ||||||||||| || | || ||| | ||| || Sbjct 506237 CAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTAT 506296 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||||||| | || || |||||||| || ||| Sbjct 506297 AATATCCAAAAGGAATCTACACTTCATTTGGTTCTTCGT 506335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || ||||| | || Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | |||| || || | ||||| || || |||||| | || || Sbjct 508842 GATACCATTGAAAACG-TCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCA 508900 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || |||||| |||| || | || || | || || || Sbjct 508901 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAA 508960 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| |||| || || ||||| || ||| Sbjct 508961 TATCCAGAAAGAATCGACCCTCCACTTGGTACTCCGT 508997 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || || || || | || || || || | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | || | ||||| | || ||||| || |||||| | || || Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || ||||||||| |||| || | ||||| | ||||||||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||||||||||| ||| Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGT 509453 >seq1094 Length=241507 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || ||||||||| || || || || || || || || |||||||| ||| | || || || Sbjct 166288 TAGAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGA 166229 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | |||||| | ||| | || | ||||||| |||||||| || || || | Sbjct 166228 GCCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACC 166169 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || ||||| || | || | || |||||||| |||| || | |||||| | || Sbjct 166168 AGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGA 166109 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||||| |||| |||||||||| || ||| Sbjct 166108 CTACAACATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGT 166066 >seq1431 Length=173026 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| | |||||||| ||||| || | || || ||| | Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | || | || || | ||||||||||||||||| | || Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || || |||||||| || || | || || | |||||| Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||||||| | ||||| ||||| || |||| ||| | || ||| Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGGC 151321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500097511489280