Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2111 113 6e-20
seq540 89.7 6e-13
seq305 87.8 2e-12
>seq2111
Length=88771
Score = 113 bits (124), Expect = 6e-20
Identities = 293/444 (66%), Gaps = 2/444 (0%)
Strand=Plus/Plus
Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946
|||||| || ||||| || || | || | ||| | ||||| || || || || |||||
Sbjct 7085 ATCAAAACGTCCTGGACGCAGCAAGGCTTTATCTAAAATATCCACACGGTTTGTAGCGGC 7144
Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006
| || |||| | ||| | ||| |||||||||||| || |||||| || || |
Sbjct 7145 CAGCACCACAACATTTGTGGTGGTATTAAAACCATCCATTTCCACCAAAAGTTGATTTAG 7204
Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTGCGTTGCTTTCCCACGG 16065
|| | ||| |||| || || | || | | | | | |||| |||||| |
Sbjct 7205 TGTGTTTTCTTGTTCCGAATG-GCCGCCAAAGGATTTACCGCCACGTTTGCGTCCCACAG 7263
Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 16125
|||| || ||||| || || | ||||| || ||||| ||| || | |||| | |
Sbjct 7264 CATCGATTTCATCGATAAACAGAATGCAAGGAGCATTTTTGCGTGCCATGGCAAACATGT 7323
Query 16126 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 16185
| |||||||| || || |||||||||||||| |||| ||| | || | | || |
Sbjct 7324 CACGTACACGAGAGGGACCAACACCAACAAACATTTCCAAAAACTCTGAGCCAGAGACTG 7383
Query 16186 GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 16245
||||| || ||||| | ||| || ||| ||||| || | | |||||| || || |
Sbjct 7384 TAATGAAAGGCACATTGGCTTCTCCGGCAGTGGCTTTAGCCAACATAGTCTTTCCTGTGC 7443
Query 16246 CTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCT 16305
| || ||| | || | |||||| ||||| || || || ||| |||| | |
Sbjct 7444 CAGGTGGACCTGTCAGCATAGCACCTTTGGGAATTTTAGCCCCCAGATCAATGTATTTTT 7503
Query 16306 CAGGTTGCTTAAGAAAATCCACAA 16329
||| | |||||||| | |||||
Sbjct 7504 GAGGATTTTTAAGAAAGTTCACAA 7527
>seq540
Length=484570
Score = 89.7 bits (98), Expect = 6e-13
Identities = 279/425 (66%), Gaps = 8/425 (2%)
Strand=Plus/Plus
Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898
|||| ||||||||||| || | || || || | ||||| || | ||||||| ||
Sbjct 95577 AACCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACC 95636
Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958
| |||| ||||| ||||||| || | || | | | |||||||| |
Sbjct 95637 AAACTGGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696
Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCT--TTGTAAAGATATACCTCGTTTGAGA 176016
||| ||| ||| | ||||| | | || | |||||||||| || | | ||
Sbjct 95697 GATGAAAAATCATACGGGC--CAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAG- 95753
Query 176017 CGCA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075
|||| ||||| ||||| | | | ||||| |||||||| | ||||| || || ||||
Sbjct 95754 CGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGA 95813
Query 176076 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACT 176134
||||||| || |||| |||| | ||||| || ||||| || | || || || |||
Sbjct 95814 TATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGC-AGTGAAACT 95872
Query 176135 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 176194
|||||||| ||||| || | | || | || | | | | || || || |||| |
Sbjct 95873 TCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACC 95932
Query 176195 TCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 176254
||| |||| ||| | ||| || | |||| ||||| ||||| ||||||||
Sbjct 95933 TCACGCTTGTCATTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAG 95992
Query 176255 CCATC 176259
|||||
Sbjct 95993 CCATC 95997
>seq305
Length=710094
Score = 87.8 bits (96), Expect = 2e-12
Identities = 439/689 (64%), Gaps = 8/689 (1%)
Strand=Plus/Minus
Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 101875
|||||||| ||| || || ||||| || || ||| || || ||| ||| || | ||
Sbjct 409066 TTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGAAACTCACAGA 409007
Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935
||||||| | ||||| | | |||| |||||||||| |||||||| || ||
Sbjct 409006 CAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCCGATGGCATAGT 408947
Query 101936 TTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTT 101995
| ||||||| | | | ||| || | ||||||||| ||||||| | | ||
Sbjct 408946 TAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACTGAAGCCCGCTGCTT 408887
Query 101996 CTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGA 102055
||||| | || | || || | || || ||| | ||||| | || || ||
Sbjct 408886 CTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGCATTCTTATTGA 408827
Query 102056 CAAGTATATTAAGGATGGTG-CTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 102114
|| |||||||| ||| ||| | | ||| | | || | ||||| |||| | |
Sbjct 408826 CACCTATATTAAAGATCGTGACCAACGTGAAT-ATTTATTCAATGCCATTGAAACTATGC 408768
Query 102115 CATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGCGTTCC 102173
|| | || ||| ||||| ||||||||| || ||| | | || | | || |
Sbjct 408767 CAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATATCAT-CGGATTCTGCTAAT 408709
Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233
|||| ||| || | | || ||||| |||||| || || |||||| || ||
Sbjct 408708 TTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTCTTCAGCGGCAGTTTT 408649
Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293
| | |||| ||| | ||||| || || || ||||| || | ||||||||||||
Sbjct 408648 GCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTTAACATTCTCCAACGAG 408589
Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAAT-TATT 102352
|| || || |||||||| || | || || ||||| || | || || | | |
Sbjct 408588 CTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATTGATGTTTAAGTATCTG 408529
Query 102353 GCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAG-GAAGCCGTTGAGATTG 102411
| | | || || | | || || ||||| | |||| ||||| ||| | || |
Sbjct 408528 GTGCA-GAAGCCCAGCAGAGA-ACGTATCATTGAGATAATAAGAGAAGCGGTTAAAATCG 408471
Query 102412 AGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGA 102471
| ||| |||| | || || | |||||| | | || |||||||||| ||| |
Sbjct 408470 AACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATTGGTATGAATTGTGATTTAA 408411
Query 102472 TGTCCGAATATATTGAGTATGTATCTGAT 102500
||||||| |||||||| | |||| | |||
Sbjct 408410 TGTCCGAGTATATTGAATTTGTAGCAGAT 408382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620648962750240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |