Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2111 113 6e-20 seq540 89.7 6e-13 seq305 87.8 2e-12 >seq2111 Length=88771 Score = 113 bits (124), Expect = 6e-20 Identities = 293/444 (66%), Gaps = 2/444 (0%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| || || | || | ||| | ||||| || || || || ||||| Sbjct 7085 ATCAAAACGTCCTGGACGCAGCAAGGCTTTATCTAAAATATCCACACGGTTTGTAGCGGC 7144 Query 15947 GATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAAT 16006 | || |||| | ||| | ||| |||||||||||| || |||||| || || | Sbjct 7145 CAGCACCACAACATTTGTGGTGGTATTAAAACCATCCATTTCCACCAAAAGTTGATTTAG 7204 Query 16007 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTGCGTTGCTTTCCCACGG 16065 || | ||| |||| || || | || | | | | | |||| |||||| | Sbjct 7205 TGTGTTTTCTTGTTCCGAATG-GCCGCCAAAGGATTTACCGCCACGTTTGCGTCCCACAG 7263 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 16125 |||| || ||||| || || | ||||| || ||||| ||| || | |||| | | Sbjct 7264 CATCGATTTCATCGATAAACAGAATGCAAGGAGCATTTTTGCGTGCCATGGCAAACATGT 7323 Query 16126 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 16185 | |||||||| || || |||||||||||||| |||| ||| | || | | || | Sbjct 7324 CACGTACACGAGAGGGACCAACACCAACAAACATTTCCAAAAACTCTGAGCCAGAGACTG 7383 Query 16186 GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 16245 ||||| || ||||| | ||| || ||| ||||| || | | |||||| || || | Sbjct 7384 TAATGAAAGGCACATTGGCTTCTCCGGCAGTGGCTTTAGCCAACATAGTCTTTCCTGTGC 7443 Query 16246 CTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCT 16305 | || ||| | || | |||||| ||||| || || || ||| |||| | | Sbjct 7444 CAGGTGGACCTGTCAGCATAGCACCTTTGGGAATTTTAGCCCCCAGATCAATGTATTTTT 7503 Query 16306 CAGGTTGCTTAAGAAAATCCACAA 16329 ||| | |||||||| | ||||| Sbjct 7504 GAGGATTTTTAAGAAAGTTCACAA 7527 >seq540 Length=484570 Score = 89.7 bits (98), Expect = 6e-13 Identities = 279/425 (66%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| ||||||||||| || | || || || | ||||| || | ||||||| || Sbjct 95577 AACCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACC 95636 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | |||| ||||| ||||||| || | || | | | |||||||| | Sbjct 95637 AAACTGGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696 Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCT--TTGTAAAGATATACCTCGTTTGAGA 176016 ||| ||| ||| | ||||| | | || | |||||||||| || | | || Sbjct 95697 GATGAAAAATCATACGGGC--CAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAG- 95753 Query 176017 CGCA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 176075 |||| ||||| ||||| | | | ||||| |||||||| | ||||| || || |||| Sbjct 95754 CGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGA 95813 Query 176076 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACT 176134 ||||||| || |||| |||| | ||||| || ||||| || | || || || ||| Sbjct 95814 TATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGC-AGTGAAACT 95872 Query 176135 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 176194 |||||||| ||||| || | | || | || | | | | || || || |||| | Sbjct 95873 TCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACC 95932 Query 176195 TCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 176254 ||| |||| ||| | ||| || | |||| ||||| ||||| |||||||| Sbjct 95933 TCACGCTTGTCATTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAG 95992 Query 176255 CCATC 176259 ||||| Sbjct 95993 CCATC 95997 >seq305 Length=710094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 439/689 (64%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 101875 |||||||| ||| || || ||||| || || ||| || || ||| ||| || | || Sbjct 409066 TTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGAAACTCACAGA 409007 Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935 ||||||| | ||||| | | |||| |||||||||| |||||||| || || Sbjct 409006 CAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCCGATGGCATAGT 408947 Query 101936 TTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTT 101995 | ||||||| | | | ||| || | ||||||||| ||||||| | | || Sbjct 408946 TAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACTGAAGCCCGCTGCTT 408887 Query 101996 CTATGCGTATCAATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGA 102055 ||||| | || | || || | || || ||| | ||||| | || || || Sbjct 408886 CTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGCATTCTTATTGA 408827 Query 102056 CAAGTATATTAAGGATGGTG-CTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 102114 || |||||||| ||| ||| | | ||| | | || | ||||| |||| | | Sbjct 408826 CACCTATATTAAAGATCGTGACCAACGTGAAT-ATTTATTCAATGCCATTGAAACTATGC 408768 Query 102115 CATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGCGTTCC 102173 || | || ||| ||||| ||||||||| || ||| | | || | | || | Sbjct 408767 CAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATATCAT-CGGATTCTGCTAAT 408709 Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||| ||| || | | || ||||| |||||| || || |||||| || || Sbjct 408708 TTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTCTTCAGCGGCAGTTTT 408649 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | |||| ||| | ||||| || || || ||||| || | |||||||||||| Sbjct 408648 GCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTTAACATTCTCCAACGAG 408589 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAAT-TATT 102352 || || || |||||||| || | || || ||||| || | || || | | | Sbjct 408588 CTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATTGATGTTTAAGTATCTG 408529 Query 102353 GCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAG-GAAGCCGTTGAGATTG 102411 | | | || || | | || || ||||| | |||| ||||| ||| | || | Sbjct 408528 GTGCA-GAAGCCCAGCAGAGA-ACGTATCATTGAGATAATAAGAGAAGCGGTTAAAATCG 408471 Query 102412 AGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGA 102471 | ||| |||| | || || | |||||| | | || |||||||||| ||| | Sbjct 408470 AACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATTGGTATGAATTGTGATTTAA 408411 Query 102472 TGTCCGAATATATTGAGTATGTATCTGAT 102500 ||||||| |||||||| | |||| | ||| Sbjct 408410 TGTCCGAGTATATTGAATTTGTAGCAGAT 408382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620648962750240