Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq51 111 2e-19 >seq51 Length=1541544 Score = 111 bits (122), Expect = 2e-19 Identities = 339/514 (66%), Gaps = 10/514 (2%) Strand=Plus/Plus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| || || || | ||| || ||||| || || || ||||| | |||||||| Sbjct 1105379 TGTGAGATTACCGGTTATGACAAAATCTCATTCCAGCCCAATTCAGGAGCTCAGGGTGAA 1105438 Query 159331 TATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGA-GATGATAAAAGAAA 159389 ||||| || || ||| || | | || ||| || ||| | || | | || | Sbjct 1105439 TATGCTGGTCTTAGAGCCATTCGCTCTTATCATGAAC-ATCGTAACGAAGGCCATCGACA 1105497 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 | | ||| | || || || || ||||| || ||||| ||||| || ||||| || Sbjct 1105498 TATTTGTCTCATTCCCATATCTGCTCATGGCACAAATCCGGCATCTGCCCAAATGGCGGG 1105557 Query 159450 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGA 159509 |||||||||| | | || | ||||||| ||||||||| |||| Sbjct 1105558 CATGAAAGTTGAACCCATTAAAATTCTCTCCGATGGCAGCATAGACATGGCTCATCTGAG 1105617 Query 159510 GAAGAAAGCAATCATGA--ATACATTTGAACTGTCATGTATTATGATTACATATCCATCT 159567 | | ||||| | | || || | | || || ||| ||||||| || ||||| || Sbjct 1105618 GGACAAAGC--TGAGGAGCATGCCAAAAATCTATCGTGTCTTATGATCACCTATCCCTCA 1105675 Query 159568 ACACATGG-TGTATTTGAAACAAACATCAGAC-AGATATGTAAGATTGTTCATGAGAATG 159625 || ||||| ||||||||| || || | | | || ||| | || | || | || Sbjct 1105676 AC-CATGGGTGTATTTGAG-CAGACTGTGGCCGACATTTGTGATCTTATCCACAAATTTG 1105733 Query 159626 GTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCAT 159685 ||||||| || ||||| |||||||| ||| | ||||| ||||| || ||| || Sbjct 1105734 GTGGTCAAGTTTATCTGGATGGTGCCAATATGAATGCCCAGGTGGGCCTATGTCGTCCTG 1105793 Query 159686 GTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATG 159745 |||| || || ||||| | ||| | || | || || || ||||||||||| |||| Sbjct 1105794 GTGATTACGGCAGTGATGTGTCCCATTTGAATCTTCACAAAACCTTCTGTATTCCCCATG 1105853 Query 159746 GAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | ||||| ||||||||| | ||||| || ||||| Sbjct 1105854 GCGGTGGTGGTCCTGGCATGGGTCCCATAGGTGT 1105887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587962683593120