Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq404 152 1e-31 seq1094 113 1e-19 >seq404 Length=684826 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||||||||||||||| | | |||| ||| ||||| |||||||| || Sbjct 506544 GTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCA 506485 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | ||| ||||||||||| || || |||||||||||||||||||| || Sbjct 506484 GCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTA 506425 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || |||||||| || ||| || || || | ||| | || || || ||||| ||| Sbjct 506424 ACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTT 506365 Query 195124 TTTACGAACACTTGCAT 195140 ||||| || | |||||| Sbjct 506364 TTTACAAAGATTTGCAT 506348 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | |||||| | || || || ||||| || || || ||||| |||| || || | Sbjct 507022 GAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACG 506963 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||| || ||||| || | || ||||||||||| ||||||||||| Sbjct 506962 ACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTC 506903 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||| || || ||||| || |||||||||||| || ||||| ||||| Sbjct 506902 CTTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGT 506843 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || ||||| | |||||| Sbjct 506842 GATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || || || ||||| ||||| ||||||| |||| || | |||||||| ||||| Sbjct 506322 TGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAG-GTACGTCCATCTTCCAGCTG 506264 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | |||||||| |||||||||||||||||||| |||||||| || Sbjct 506263 TTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTT 506204 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || |||||||| || || ||| || || | || | ||||| || || Sbjct 506203 GGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTGCCAGT 506144 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 506143 TAATGTCTTCACGAAGATCTGCAT 506120 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || || ||||| || | | || | |||||||| | ||| Sbjct 509440 TGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTCCAACTGT 509381 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | ||||| || ||||| |||||||||||||| ||||||||||| Sbjct 509380 TTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTGAATTTTG 509321 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || ||||| || || ||||||||| | |||| |||||||| ||| Sbjct 509320 GCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTTTCCAGTC 509261 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | |||||| Sbjct 509260 AAAGTCTTGACGAAAATTTGCAT 509238 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || ||||| || ||||| ||||| | | || | |||||||| | ||| Sbjct 508985 GTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCCAACTG 508926 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | ||||| || ||||| ||||| ||||| ||||||||||| || Sbjct 508925 TTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTT 508866 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| |||||||| || || ||| ||||| | || | || ||||| || Sbjct 508865 AGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTTCCAGT 508806 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 508805 CAGGGTCTTGACGAAGATTTGCAT 508782 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| || || ||||| || | | ||| | |||||||| | ||| Sbjct 509212 TGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCCAATTGC 509153 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | |||||||||||||| |||||||||||||| ||||||||||| Sbjct 509152 TTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGAATTTTA 509093 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || || || || || ||| ||||| | || | || ||||||||| Sbjct 509092 GCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTTCCTGTC 509033 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 509032 AGGGTCTTGACGAAGATTTGCAT 509010 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||||||||| || || |||| | || | || ||||| | ||| Sbjct 506778 TGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGC 506719 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | || ||||| ||||| ||||| |||||||||||||||||||| Sbjct 506718 TTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTG 506659 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || || || ||| ||| ||||| || || | || ||||| || Sbjct 506658 GCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTT 506599 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 506598 AATGTCTTAACGAATATTTGCAT 506576 >seq1094 Length=241507 Score = 113 bits (124), Expect = 1e-19 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTAC 195001 ||| ||||| |||||||| ||||| || | |||| || | ||||| || | || || | Sbjct 166084 AGTCGACTCCTTTTGAATGTTGTAGTCTGACAAG-GTGCGACCATCCTCCAATTGTTTGC 166142 Query 195002 CTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 | || ||||| | |||||||| ||||| || || |||||||||||||| ||||| || Sbjct 166143 CAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCT 166202 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 |||| || ||||| ||||| ||| || || || | ||||| || || || || | | Sbjct 166203 TGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGG 166262 Query 195122 TTTTTACGAACACTTGCATTT 195142 | || || || | ||||||| Sbjct 166263 TCTTGACAAAGATCTGCATTT 166283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109310420164214