Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1431 109 4e-19
seq404 100 2e-16
>seq1431
Length=173026
Score = 109 bits (120), Expect = 4e-19
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || | ||| | |||||| || |||| || ||| || || ||||| ||||| ||
Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | || |||| || |||||||||||||||||||||| ||||| || || | ||
Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||||| ||||| |||||| || || | |||| | ||| | ||||||
Sbjct 151200 ATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACT 151141
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACT 34992
|| | || ||||| || ||||| | ||| || ||||| |||||||| |||| || ||
Sbjct 151140 TCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTTCGCAGCCT 151083
>seq404
Length=684826
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
|||||| |||| ||| ||| || || || ||||| || || | | | ||| |||| ||
Sbjct 506329 AACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTC 506270
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||||||| |||||||| || | ||||| || ||| | || | || || || ||
Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| ||| || | | || | ||| || ||||| || | || ||||| ||
Sbjct 506209 AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTT 506150
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || | |||||||| ||||||||||||||
Sbjct 506149 GCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || ||||||||| || ||||| || || | | || |||| |||
Sbjct 508990 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACCATCTTCC 508931
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| |||||| || || || || | |||||||| ||| | || | || |||||||| |
Sbjct 508930 AACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 508871
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||||| | | || | || | || || || | || |||||||||
Sbjct 508870 ATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGATGGTTTTT 508811
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| || ||||| ||||||
Sbjct 508810 CCAGTCAGGGTCTTGACGAAGATTTGCATA 508781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324585956164176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |