Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 387 2e-102
seq305 315 8e-81
>seq1090
Length=275775
Score = 387 bits (428), Expect = 2e-102
Identities = 1179/1820 (65%), Gaps = 36/1820 (2%)
Strand=Plus/Minus
Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063
|||| ||| |||| ||||||||||| || ||||| | || |||| |||||||
Sbjct 261555 GCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAA 261496
Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123
|| || ||| ||||| || | || || | | ||| ||||| | ||||||||
Sbjct 261495 TGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTT 261436
Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183
|| ||||| || || || | |||||| ||||| | | | | | | || |||
Sbjct 261435 TGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCC 261376
Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGTA----TTTTGAATAGA 47239
||||| ||||| || | | | || |||| ||||| || | ||||| || ||
Sbjct 261375 CATACCGTTTTGTAGAGCTCTCGTATTTCTT-TGGGAATTTCCTCGATGTTTTGTATGGA 261317
Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299
|| | | | |||||||| ||||| | ||| | ||| || | |||| || ||
Sbjct 261316 GCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAA 261257
Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359
||| | | |||| |||| ||||| | ||||| || |||||||| | || ||||
Sbjct 261256 ATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATA 261197
Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419
|| || || || ||||| | || |||||| || || | |||||| ||||| || ||
Sbjct 261196 AATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGC 261137
Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479
|| ||||||| || | | | ||| | ||| |||| ||| ||
Sbjct 261136 CGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTT 261077
Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539
||||||||| ||||| | || || ||||| | ||||||||||| ||
Sbjct 261076 TAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTAT 261017
Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599
||||| || | || || ||| |||| ||| ||||| | | ||| ||| | |||
Sbjct 261016 ACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTC 260957
Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659
||||||||||||||| |||| ||| || || ||||||||||||| | || || |||
Sbjct 260956 ACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGT-TGATTCAATTTGA 260898
Query 47660 TG--CTTCT-GATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716
| || || | | ||| | ||||| | ||||| || || || ||
Sbjct 260897 AGGCCTCCTCGCT--TTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTG 260840
Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATA 47776
|||||||| ||||| || | ||| | |||||| || || | | ||||||
Sbjct 260839 GACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATA 260780
Query 47777 TTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNN-ACAATTTCTCTTA 47835
| ||| | |||||| ||||| || ||| | | | ||| | |
Sbjct 260779 GTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCT-TCA 260721
Query 47836 ATTTATTAAAATCAAACTTGTTATTTA-----TAACAAACCTATTAAGTGCTATAGATGC 47890
|||| ||||| ||||| ||| ||| | |||||| | || || || || ||
Sbjct 260720 ATTTCTTAAAGTCAAAA--GTTTTTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGC 260663
Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950
| || || ||||| | |||| || | ||||| | ||||| | || | |||
Sbjct 260662 CAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATT 260603
Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTA 48010
| ||||| || || || | |||||| |||||| | ||||| | |||||| |
Sbjct 260602 GCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAA 260543
Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT 48070
||||| | || ||||||||||||| || ||||| || || | ||||| | |
Sbjct 260542 TAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTG 260483
Query 48071 AGCCTTTATAACAGCTCT---AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTC 48127
||||| || | ||| |||||| | | ||||||||| || | ||| ||
Sbjct 260482 CGCCTTAATG---GTTCTGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTC 260426
Query 48128 AAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCA 48187
|||||| || || | || | || | || ||||||| | ||||||||| | |||||
Sbjct 260425 AAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCA 260366
Query 48188 ATCCTCATCATTTTTTACTCTAGTC--ATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245
||| | | ||| || | | ||| ||||| | |||||||||||||||||| ||| |
Sbjct 260365 ATCGCCGT--TTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGC-ATAGAA 260309
Query 48246 AA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
|| ||| || | | | ||||| ||||| ||||| |||| | || | ||| || |
Sbjct 260308 AAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAA 260249
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
|| || | |||||| ||||| || || || || | | |||| || ||||| ||| ||
Sbjct 260248 GATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACC 260189
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
||||| | || | ||| ||| || | ||||||||||| || || | |||||| ||
Sbjct 260188 CTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGA 260129
Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATA 48482
| ||||| || || | || || |||| |||| | || | | |||| ||
Sbjct 260128 GGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTG--ATT 260071
Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542
|| ||||| || || ||| || || | ||||||| | | | | | | |||| ||
Sbjct 260070 CCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCC 260011
Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602
|| ||| ||| | | ||| | || || |||||| ||||| ||| ||| || ||
Sbjct 260010 TCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTG 259951
Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662
||| | ||| ||||| || |||||||| |||| | ||| || ||| | |||||
Sbjct 259950 GCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAA 259891
Query 48663 GTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722
|||||||| | |||||||| ||| | ||| ||||||| | |||||||| | ||||
Sbjct 259890 GTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATA 259831
Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782
| ||| || | ||| |||| || ||| |||||||| |||||||| ||| | ||
Sbjct 259830 TGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTC 259771
Query 48783 TTAAAACCAAAATAGTTGTA 48802
||||| ||||| ||||||||
Sbjct 259770 TTAAATCCAAAGTAGTTGTA 259751
>seq305
Length=710094
Score = 315 bits (348), Expect = 8e-81
Identities = 510/725 (70%), Gaps = 9/725 (1%)
Strand=Plus/Plus
Query 18773 ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC 18832
|||| ||||| | ||| || | ||| |||||||||| |||||| | ||| | |||||
Sbjct 408361 ATCC-AATTCGACTAGCAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCAC 408419
Query 18833 AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTA 18892
||||||| || || || || || | ||| |||||||| ||||| ||||| || || |
Sbjct 408420 AATTCATACCAATCAAATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAA 408479
Query 18893 CTGCCTCTGATATAATAG--ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTT 18950
| || ||| ||| || || || | ||| | | || | | |||| ||
Sbjct 408480 CCGCTTCTCTTATTATCTCAATGATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTT 408537
Query 18951 AAACATCAA-ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAG 19009
||||||||| ||| |||||||||||||| | || ||||| | ||||| || || |
Sbjct 408538 AAACATCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGG 408596
Query 19010 AAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATC 19069
| |||||||| || ||||| || || | ||| || |||||||| || || ||||| |
Sbjct 408597 AGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGC 408656
Query 19070 CAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT 19129
| |||||||| ||||| || || |||||||| | || | ||| ||| || |||||
Sbjct 408657 CGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAG 408716
Query 19130 CATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188
|| |||| |||||| || ||||||||||| || |||| ||| |||||| ||
Sbjct 408717 AATCCG-ATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTT 408775
Query 19189 TCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT 19248
|| || | ||| |||| ||| ||| | || |||||||| ||| | || || |
Sbjct 408776 TCAATGGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGA 408835
Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT 19308
| ||||||||||| || |||| ||| || ||||| ||||| || || || || || |
Sbjct 408836 ATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGG 408895
Query 19309 GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCA 19368
||||| |||| || || || | ||||||| ||||| | ||| ||||||||||| |||
Sbjct 408896 GCTTCAGTTACTTGCACCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCA 408955
Query 19369 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT 19428
|| || ||||| || || || ||||| ||| |||| | |||||| || | |
Sbjct 408956 TCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGT 409015
Query 19429 GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488
| | ||| ||| ||||||||||| | ||| ||||| ||||| |||||||| || |||
Sbjct 409016 TTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCC 409075
Query 19489 TCTGC 19493
|| ||
Sbjct 409076 TCAGC 409080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562024188572880
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