Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1090 387 2e-102 seq305 315 8e-81 >seq1090 Length=275775 Score = 387 bits (428), Expect = 2e-102 Identities = 1179/1820 (65%), Gaps = 36/1820 (2%) Strand=Plus/Minus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| ||| |||| ||||||||||| || ||||| | || |||| ||||||| Sbjct 261555 GCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAA 261496 Query 47064 TGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTC 47123 || || ||| ||||| || | || || | | ||| ||||| | |||||||| Sbjct 261495 TGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTT 261436 Query 47124 TGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCC 47183 || ||||| || || || | |||||| ||||| | | | | | | || ||| Sbjct 261435 TGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCC 261376 Query 47184 CATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAGTA----TTTTGAATAGA 47239 ||||| ||||| || | | | || |||| ||||| || | ||||| || || Sbjct 261375 CATACCGTTTTGTAGAGCTCTCGTATTTCTT-TGGGAATTTCCTCGATGTTTTGTATGGA 261317 Query 47240 TCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgttcagttaa 47299 || | | | |||||||| ||||| | ||| | ||| || | |||| || || Sbjct 261316 GCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAA 261257 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATA 47359 ||| | | |||| |||| ||||| | ||||| || |||||||| | || |||| Sbjct 261256 ATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATA 261197 Query 47360 TATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGC 47419 || || || || ||||| | || |||||| || || | |||||| ||||| || || Sbjct 261196 AATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGC 261137 Query 47420 TGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNN 47479 || ||||||| || | | | ||| | ||| |||| ||| || Sbjct 261136 CGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTT 261077 Query 47480 NNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 ||||||||| ||||| | || || ||||| | ||||||||||| || Sbjct 261076 TAGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTAT 261017 Query 47540 TCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTC 47599 ||||| || | || || ||| |||| ||| ||||| | | ||| ||| | ||| Sbjct 261016 ACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTC 260957 Query 47600 ACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT 47659 ||||||||||||||| |||| ||| || || ||||||||||||| | || || ||| Sbjct 260956 ACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGT-TGATTCAATTTGA 260898 Query 47660 TG--CTTCT-GATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTG 47716 | || || | | ||| | ||||| | ||||| || || || || Sbjct 260897 AGGCCTCCTCGCT--TTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTG 260840 Query 47717 AACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATA 47776 |||||||| ||||| || | ||| | |||||| || || | | |||||| Sbjct 260839 GACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATA 260780 Query 47777 TTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNN-ACAATTTCTCTTA 47835 | ||| | |||||| ||||| || ||| | | | ||| | | Sbjct 260779 GTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCT-TCA 260721 Query 47836 ATTTATTAAAATCAAACTTGTTATTTA-----TAACAAACCTATTAAGTGCTATAGATGC 47890 |||| ||||| ||||| ||| ||| | |||||| | || || || || || Sbjct 260720 ATTTCTTAAAGTCAAAA--GTTTTTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGC 260663 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 | || || ||||| | |||| || | ||||| | ||||| | || | ||| Sbjct 260662 CAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATT 260603 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTA 48010 | ||||| || || || | |||||| |||||| | ||||| | |||||| | Sbjct 260602 GCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAA 260543 Query 48011 AAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT 48070 ||||| | || ||||||||||||| || ||||| || || | ||||| | | Sbjct 260542 TAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTG 260483 Query 48071 AGCCTTTATAACAGCTCT---AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTC 48127 ||||| || | ||| |||||| | | ||||||||| || | ||| || Sbjct 260482 CGCCTTAATG---GTTCTGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTC 260426 Query 48128 AAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCA 48187 |||||| || || | || | || | || ||||||| | ||||||||| | ||||| Sbjct 260425 AAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCA 260366 Query 48188 ATCCTCATCATTTTTTACTCTAGTC--ATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 ||| | | ||| || | | ||| ||||| | |||||||||||||||||| ||| | Sbjct 260365 ATCGCCGT--TTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGC-ATAGAA 260309 Query 48246 AA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 || ||| || | | | ||||| ||||| ||||| |||| | || | ||| || | Sbjct 260308 AAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAA 260249 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 || || | |||||| ||||| || || || || | | |||| || ||||| ||| || Sbjct 260248 GATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACC 260189 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | || | ||| ||| || | ||||||||||| || || | |||||| || Sbjct 260188 CTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGA 260129 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATA 48482 | ||||| || || | || || |||| |||| | || | | |||| || Sbjct 260128 GGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTG--ATT 260071 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || ||||| || || ||| || || | ||||||| | | | | | | |||| || Sbjct 260070 CCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCC 260011 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 || ||| ||| | | ||| | || || |||||| ||||| ||| ||| || || Sbjct 260010 TCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTG 259951 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662 ||| | ||| ||||| || |||||||| |||| | ||| || ||| | ||||| Sbjct 259950 GCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAA 259891 Query 48663 GTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 |||||||| | |||||||| ||| | ||| ||||||| | |||||||| | |||| Sbjct 259890 GTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATA 259831 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 | ||| || | ||| |||| || ||| |||||||| |||||||| ||| | || Sbjct 259830 TGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTC 259771 Query 48783 TTAAAACCAAAATAGTTGTA 48802 ||||| ||||| |||||||| Sbjct 259770 TTAAATCCAAAGTAGTTGTA 259751 >seq305 Length=710094 Score = 315 bits (348), Expect = 8e-81 Identities = 510/725 (70%), Gaps = 9/725 (1%) Strand=Plus/Plus Query 18773 ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC 18832 |||| ||||| | ||| || | ||| |||||||||| |||||| | ||| | ||||| Sbjct 408361 ATCC-AATTCGACTAGCAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCAC 408419 Query 18833 AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTA 18892 ||||||| || || || || || | ||| |||||||| ||||| ||||| || || | Sbjct 408420 AATTCATACCAATCAAATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAA 408479 Query 18893 CTGCCTCTGATATAATAG--ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTT 18950 | || ||| ||| || || || | ||| | | || | | |||| || Sbjct 408480 CCGCTTCTCTTATTATCTCAATGATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTT 408537 Query 18951 AAACATCAA-ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAG 19009 ||||||||| ||| |||||||||||||| | || ||||| | ||||| || || | Sbjct 408538 AAACATCAATACA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGG 408596 Query 19010 AAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATC 19069 | |||||||| || ||||| || || | ||| || |||||||| || || ||||| | Sbjct 408597 AGAATGTTAAGCCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGC 408656 Query 19070 CAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT 19129 | |||||||| ||||| || || |||||||| | || | ||| ||| || ||||| Sbjct 408657 CGCTGAAGAATATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAG 408716 Query 19130 CATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 || |||| |||||| || ||||||||||| || |||| ||| |||||| || Sbjct 408717 AATCCG-ATGATATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTT 408775 Query 19189 TCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT 19248 || || | ||| |||| ||| ||| | || |||||||| ||| | || || | Sbjct 408776 TCAATGGCATTGAATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGA 408835 Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTT 19308 | ||||||||||| || |||| ||| || ||||| ||||| || || || || || | Sbjct 408836 ATGCTGTACATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGG 408895 Query 19309 GCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCA 19368 ||||| |||| || || || | ||||||| ||||| | ||| ||||||||||| ||| Sbjct 408896 GCTTCAGTTACTTGCACCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCA 408955 Query 19369 TCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT 19428 || || ||||| || || || ||||| ||| |||| | |||||| || | | Sbjct 408956 TCGGAGGCAGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGT 409015 Query 19429 GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 | | ||| ||| ||||||||||| | ||| ||||| ||||| |||||||| || ||| Sbjct 409016 TTCTCCCAGTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCC 409075 Query 19489 TCTGC 19493 || || Sbjct 409076 TCAGC 409080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562024188572880