Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq305 248 1e-60 >seq305 Length=710094 Score = 248 bits (274), Expect = 1e-60 Identities = 478/701 (68%), Gaps = 12/701 (2%) Strand=Plus/Plus Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 || || | ||| || |||||||| || || | |||||| ||| | || |||||||| Sbjct 408374 AGCAGACGATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATC 408433 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 | || ||| | ||| ||| ||| ||| | ||| ||| | || || ||| | | | Sbjct 408434 AAATTGCATGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATT 408493 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTT-----AAATATTTAAACAATAA-A 37175 || | || ||| |||| | | |||| || | | ||| ||||||| || | Sbjct 408494 ATCTCAATGATACGTTCT-CTGCTGGGC----TTCTGCACCAGATACTTAAACATCAATA 408548 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || |||||||||||||| |||||||| || | ||||| || || || || ||||| Sbjct 408549 CA-GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAG 408607 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||||| || | ||| || | ||| || || | |||||| || ||||| Sbjct 408608 CCGGGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAAT 408667 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || |||||||| || ||||| |||| | |||| ||| ||| | | | || || Sbjct 408668 ATGCCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGAT 408727 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||||| | |||||| || ||| ||||||| | || |||||||| || || Sbjct 408728 ATCCATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTG 408787 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 || | | | | || |||| |||| | ||||| || ||||| || | || |||||| Sbjct 408788 AATAAATATTCACGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATT 408847 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 || ||||||| ||| || ||||| ||||| || ||||| || || | ||||||| || | Sbjct 408848 TCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACT 408907 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 || || || | | |||| |||| | | || ||||||||||| ||||| || ||| Sbjct 408908 TGCACCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCA 408967 Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCA 37655 |||||||| | |||| || |||| |||||||| | || | ||| | ||| ||| Sbjct 408968 AAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCA 409027 Query 37656 TTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||||||| || | ||| ||||| ||||| |||||||| Sbjct 409028 GACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAA 409068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592227641513680