Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq404 172 4e-38
seq1431 163 2e-35
seq69 84.2 2e-11
>seq404
Length=684826
Score = 172 bits (190), Expect = 4e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | || ||||| || ||||| || |||||||||||||| || || || ||||
Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | || ||||||||||| || || || ||||||||||||||||| || |||
Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| |||||||| ||||||||||| || ||| |||||| ||| ||||| | ||| |||
Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| || |||| ||||| || ||||| || || || ||||| ||||||
Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575
Score = 167 bits (184), Expect = 2e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | || ||| | ||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct 506346 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGAC 506287
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| || ||||| ||||| |||||||| |||||||| || |||
Sbjct 506286 AAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 506227
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||||||||||||||| || ||| ||| |||| | || ||||| | ||| ||
Sbjct 506226 ATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACC 506167
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | |||| || ||||| ||||| || || || || ||||||||
Sbjct 506166 TCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 150 bits (166), Expect = 1e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || | || ||| | |||||||| |||||||||||||| || || ||||| || |
Sbjct 509236 CCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 509177
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| ||| | |||| ||||||||||| || || || || || || ||||| || || |||
Sbjct 509176 AAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGA 509117
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||||||||||||||| ||| ||| |||| | ||| || || | ||| |||
Sbjct 509116 ATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACT 509057
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
|| | |||| ||||| || || | || || || || || ||||||
Sbjct 509056 TCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCATG 509009
Score = 147 bits (162), Expect = 2e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| ||||||||||| |||||||| || || || || ||||| |||| | || | |
Sbjct 507019 ACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACC 506960
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| ||||| ||||| || || || |||||||||||||| || || ||||||||||| ||
Sbjct 506959 ATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTT 506900
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|||||||| || ||| || |||| | ||||| || | || ||||| || ||||
Sbjct 506899 GTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGAT 506840
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|||||||| || || || || || || || |||||
Sbjct 506839 GGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 138 bits (152), Expect = 9e-28
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314
|| || || ||||| | |||||||||||||| ||||||||||| | | |||| |
Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| || | ||||| || || || ||||| |||||||| || || || || ||||||||
Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
||||||||||| ||| ||| |||| | || ||||| | || || || | ||||
Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||||| || || || ||||||||||| || ||||||
Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| | || ||||| || || ||||| || || || ||||| || |
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| ||||| || || || ||||| |||||||| || ||||| || |||
Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||||||||||||||| || ||| |||||| || ||||| | |||||||
Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| | || | || || || || ||||| || || || || |||||
Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 95.1 bits (104), Expect = 1e-14
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| ||||||||||| |||||||| || || || || ||||| |||| | || | |
Sbjct 508769 ACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACC 508710
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTC 101370
||| ||||| || ||||| ||||| |||||||| || ||||| || ||||| |||||
Sbjct 508709 ATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTC 508653
>seq1431
Length=173026
Score = 163 bits (180), Expect = 2e-35
Identities = 167/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311
|| || |||||||||||||| || ||||| |||||||| ||||| || | | || |
Sbjct 151311 AATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGA 151252
Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371
|||| || | || || || |||||||| ||||| |||||||| || ||||| || |||
Sbjct 151251 CCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCT 151192
Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431
|| || ||||| || |||||| |||||| || ||||||| || |||||||| ||
Sbjct 151191 TTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTA 151132
Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||| ||||||||||| ||||| ||||||||
Sbjct 151131 ATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
>seq69
Length=1433716
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820
||||||| || ||||| | |||||||||||||||||||| || | ||||||| |
Sbjct 1185315 CATAACCATTAGGATCTCTGCCATCCAAACTGTATTTGTCATTAAGTAATATGGCTATTT 1185256
Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880
|| ||| | || || ||||| ||||| ||||||||||||||||| || | |
Sbjct 1185255 CCAATGCCTTTTCTGGAGATTCTGACCACTCTAAGATTTTTTTAGCCCAATACATGCGTA 1185196
Query 13881 TATATCCGTGCATTTTGCC 13899
| |||| |||||||| ||
Sbjct 1185195 AAAATCCATGCATTTTTCC 1185177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396220241438994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |