Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq404 172 4e-38 seq1431 163 2e-35 seq69 84.2 2e-11 >seq404 Length=684826 Score = 172 bits (190), Expect = 4e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||||| || ||||| || |||||||||||||| || || || |||| Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || ||||||||||| || || || ||||||||||||||||| || ||| Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| ||||||||||| || ||| |||||| ||| ||||| | ||| ||| Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| ||||| || ||||| || || || ||||| |||||| Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCATG 506575 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | ||| |||||||| |||||||| ||||| ||||| ||||||| Sbjct 506346 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGAC 506287 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| || ||||| ||||| |||||||| |||||||| || ||| Sbjct 506286 AAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 506227 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||||||||| || ||| ||| |||| | || ||||| | ||| || Sbjct 506226 ATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACC 506167 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || ||||| ||||| || || || || |||||||| Sbjct 506166 TCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | |||||||| |||||||||||||| || || ||||| || | Sbjct 509236 CCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGAC 509177 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||||||||| || || || || || || ||||| || || ||| Sbjct 509176 AAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGA 509117 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||||||||| ||| ||| |||| | ||| || || | ||| ||| Sbjct 509116 ATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACT 509057 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| ||||| || || | || || || || || |||||| Sbjct 509056 TCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCATG 509009 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||||||||| |||||||| || || || || ||||| |||| | || | | Sbjct 507019 ACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACC 506960 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| ||||| || || || |||||||||||||| || || ||||||||||| || Sbjct 506959 ATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTT 506900 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| || ||| || |||| | ||||| || | || ||||| || |||| Sbjct 506899 GTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGAT 506840 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || || || || || || ||||| Sbjct 506839 GGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || ||||| | |||||||||||||| ||||||||||| | | |||| | Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || || || ||||| |||||||| || || || || |||||||| Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| ||| ||| |||| | || ||||| | || || || | |||| Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || ||||||||||| || |||||| Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||| || || ||||| || || || ||||| || | Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || ||||| |||||||| || ||||| || ||| Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||||||||||||||| || ||| |||||| || ||||| | ||||||| Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || ||||| || || || || ||||| Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||||||||| |||||||| || || || || ||||| |||| | || | | Sbjct 508769 ACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACC 508710 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTC 101370 ||| ||||| || ||||| ||||| |||||||| || ||||| || ||||| ||||| Sbjct 508709 ATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTC 508653 >seq1431 Length=173026 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 || || |||||||||||||| || ||||| |||||||| ||||| || | | || | Sbjct 151311 AATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGA 151252 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| || | || || || |||||||| ||||| |||||||| || ||||| || ||| Sbjct 151251 CCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCT 151192 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || || ||||| || |||||| |||||| || ||||||| || |||||||| || Sbjct 151191 TTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTA 151132 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||| ||||||||||| ||||| |||||||| Sbjct 151131 ATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094 >seq69 Length=1433716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| || ||||| | |||||||||||||||||||| || | ||||||| | Sbjct 1185315 CATAACCATTAGGATCTCTGCCATCCAAACTGTATTTGTCATTAAGTAATATGGCTATTT 1185256 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 || ||| | || || ||||| ||||| ||||||||||||||||| || | | Sbjct 1185255 CCAATGCCTTTTCTGGAGATTCTGACCACTCTAAGATTTTTTTAGCCCAATACATGCGTA 1185196 Query 13881 TATATCCGTGCATTTTGCC 13899 | |||| |||||||| || Sbjct 1185195 AAAATCCATGCATTTTTCC 1185177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396220241438994