Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1431 120 2e-22 seq404 114 1e-20 seq340 114 1e-20 >seq1431 Length=173026 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || ||||| ||||| || ||||| || ||||| || |||| | ||| | Sbjct 151308 CGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCA 151249 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | ||| || ||||||||||| | || |||||||| | |||| ||||| ||| Sbjct 151248 TCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTG 151189 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| |||||| | | | || |||| ||| || || | |||||| Sbjct 151188 TCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATG 151129 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| |||||||| ||||||||||||||| Sbjct 151128 GTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATC 151093 >seq404 Length=684826 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || ||||||||||||||||||||||| | |||| Sbjct 506565 AGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGC 506506 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || || || |||| ||||||||| || | || | || || Sbjct 506505 CCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCT 506446 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || || | ||| ||||||| || Sbjct 506445 TTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTG 506386 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| ||||||||||| || ||||| Sbjct 506385 ATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || ||||| || || ||| || || || ||||| || || || | ||| Sbjct 507021 AGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGA 506962 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || |||| |||||||| || | ||||| ||| ||| Sbjct 506961 CCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCC 506902 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | || || | ||| || || | || Sbjct 506901 TTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTG 506842 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||| || || || || || ||||| Sbjct 506841 ATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||||||||| || ||||||||||| || || || || Sbjct 506802 CCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGAC 506743 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || |||| ||||| ||||| || || || |||| ||||||||||| | |||| Sbjct 506742 AATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGA 506683 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || || ||| | | || || || | || || Sbjct 506682 ATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACT 506623 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||||||||| || || || || || || ||||| Sbjct 506622 TCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||||||| || || || ||||| ||||| ||||| || Sbjct 506347 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGA 506288 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || |||| ||| ||||||||||| |||| || |||||||| | || Sbjct 506287 CAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGG 506228 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| || || || |||||| ||| ||| | | | || || | || || Sbjct 506227 AATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAAC 506168 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || || || || || || || |||||||| Sbjct 506167 CTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120 >seq340 Length=684216 Score = 114 bits (126), Expect = 1e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 |||||||| || | ||||||||||| |||||||| | || || ||||| |||| Sbjct 333777 GGATAAAAAATACGCTCACAAATTAACTGAGCAATGCGATCACCACGTTTCACCTCAAAC 333718 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 ||| |||||| ||||| |||||||| || || | ||| || ||||| || || || | Sbjct 333717 TCTTGGTCGGAGTGATTAAACAGCACAACGCCAAGGTTTCCTCTGTAGTCTTCGTCCACG 333658 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 || || ||||| || || ||||||| || || || | ||||| || || || ||||| Sbjct 333657 ACCCCGGCACCAACATCAATGAAGTTTTTAACAGCCAAACCAGAACGTGGAGCAATTCGC 333598 Query 9247 CCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || || | || |||| ||| | |||| || ||| | |||| ||||||| Sbjct 333597 CCATAAGAGCCGTTAGGTACTTGAATTTGCAAATCCGTCTTCACCAATGCCTTGCC 333542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380881692883566