Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq305 136 7e-27
seq1090 114 2e-20
>seq305
Length=710094
Score = 136 bits (150), Expect = 7e-27
Identities = 351/531 (66%), Gaps = 14/531 (3%)
Strand=Plus/Plus
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
||||| || | ||||| |||||||| || || ||| |||||||||| | ||
Sbjct 408551 GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCG 408610
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||| | || | | || | ||||||||| | || ||| ||| |||||| |||
Sbjct 408611 GGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATG 408670
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
|| || || || || || || | | | || || ||| ||| | ||| |||
Sbjct 408671 CCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATC 408730
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
|| || | ||||| || || || | || | |||||| || || ||||| |||
Sbjct 408731 CATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAAT 408790
Query 48374 AGCTTCTTGCACTCACCTGCGTC-CGC-----AACATAGGTAGTGAGCAGCTTTGC-GTA 48426
| | | |||| | ||| || || |||||| || | | ||| |||
Sbjct 408791 AAAT------ATTCACGTTGGTCACGATCTTTAATATAGGT-GTCAATAAGAATGCTGTA 408843
Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486
||| || ||||| |||||||| ||||| |||||||| || |||||| | ||| |||
Sbjct 408844 CATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGT 408903
Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546
|| ||||| ||| || |||||||| | ||||||||||| ||||| ||||| || ||
Sbjct 408904 TACTTGCACCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGC 408963
Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606
||||||||| || | ||||| || ||||| | || |||| ||||| | |||
Sbjct 408964 AGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCA 409023
Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
| | | ||||| ||| |||||||| || |||||||| || || ||
Sbjct 409024 GTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGC 409074
>seq1090
Length=275775
Score = 114 bits (126), Expect = 2e-20
Identities = 692/1084 (64%), Gaps = 49/1084 (5%)
Strand=Plus/Minus
Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963
||| | ||||| || | ||| ||||| || || || | | |||| ||||||||||
Sbjct 261243 TGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTG 261184
Query 212964 TAGGGCTCGAT-GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022
|| || |||| ||| || ||||| |||| ||| || ||||| || |||||||||||
Sbjct 261183 TACGGTTCGAAAGCT-TCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGG 261125
Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082
|||| || || || | || || || | | | || | || | |||||
Sbjct 261124 GGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCA 261065
Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142
||||| ||| ||| | |||| ||||||||||||| | || | || ||
Sbjct 261064 ATCCCAG-----AGATCGGTGGGCA-CCTT---GTTCCACATGTCATATTGAAGTATACC 261014
Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202
||||||||| ||||| || | || | ||||| |||| | | |||| || ||
Sbjct 261013 TTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACA 260954
Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262
|| | || ||| | ||||| || ||||||||||| | || | || |||
Sbjct 260953 ACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGC 260894
Query 213263 CTCTGGGGACGTGAAGGGCATCAT-CATGCG--TTGGAACACATCAGCCAGCCCCTGGAC 213319
||| | | |||| || | |||| | || || | || || | ||||||||
Sbjct 260893 CTCCTCGCTTTCGTAGGG-ATAACGCATGAGAATTAGAGTA--TCGGCAAAACCCTGGAC 260837
Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAA 213379
|| ||||| ||||| | ||||| || ||||| || | ||||| || || || |
Sbjct 260836 ACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGTA 260777
Query 213380 GTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA 213439
|||| || ||||| |||||||| ||||| | | ||||| | || || |
Sbjct 260776 GTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTT 260717
Query 213440 CTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAAC----TCAGGCAGGGCGATGCTGG 213495
|| | | || | || | | | | ||||||| ||||||| ||| ||
Sbjct 260716 CTTAA-AGTCAAAA-GTTTTTTCGGGCGT-CACAAACATGTTCAGGCAA----ATGGAGG 260664
Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555
||| |||||| || || | || | | ||| || || | ||| || ||||||| |
Sbjct 260663 CCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAAT 260604
Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTT-GCGTTGGCA-GAATCCTT 213613
|||||||| |||||||| | || || || || ||||| ||| | || || |||||
Sbjct 260603 TGCTGCATTTAATGGTGCCAACATTTTGTTGATT--ACTTTTGCGATTACAAGAGTCCTT 260546
Query 213614 GTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGG 213671
| ||||||||||| | || || |||| ||||| | | || ||| ||| ||
Sbjct 260545 AAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAAT--GGCAAACCAAAGC 260488
Query 213672 TACCTG-GCCTTGACCACCCGCCTGACAGCT---CCGGGCGTAGCCTCGTACTGTTCGTA 213727
|||| ||||| | | || |||| |||| | | ||||| | ||||||
Sbjct 260487 G-CCTGCGCCTTAATGGTTC---TGTTAGCTTTGCCGGCCTTT---TCGTATTTTTCGTA 260435
Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG-GGACACA 213786
|||| || ||||| | ||||||||| | ||||| ||||| || | |||||||
Sbjct 260434 AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATT-TGTGAGGACACA 260376
Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846
| ||| ||| || |||| ||| || | |||| |||| || || | ||| || |
Sbjct 260375 TTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAG 260316
Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906
| ||| || || |||| | ||| || || | || || | ||| | ||
Sbjct 260315 CATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAA 260256
Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGC 213966
| ||||||||||||| ||||| || |||| |||||||||||| || || || | ||||
Sbjct 260255 ACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGC 260196
Query 213967 CGCC 213970
| ||
Sbjct 260195 CACC 260192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931392581025280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |