Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq305 136 7e-27 seq1090 114 2e-20 >seq305 Length=710094 Score = 136 bits (150), Expect = 7e-27 Identities = 351/531 (66%), Gaps = 14/531 (3%) Strand=Plus/Plus Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || | ||||| |||||||| || || ||| |||||||||| | || Sbjct 408551 GCAAAATCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCG 408610 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | || | ||||||||| | || ||| ||| |||||| ||| Sbjct 408611 GGCATTAGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATG 408670 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || || || || || || || | | | || || ||| ||| | ||| ||| Sbjct 408671 CCTTCAACAGCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATC 408730 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || || | ||||| || || || | || | |||||| || || ||||| ||| Sbjct 408731 CATGACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAAT 408790 Query 48374 AGCTTCTTGCACTCACCTGCGTC-CGC-----AACATAGGTAGTGAGCAGCTTTGC-GTA 48426 | | | |||| | ||| || || |||||| || | | ||| ||| Sbjct 408791 AAAT------ATTCACGTTGGTCACGATCTTTAATATAGGT-GTCAATAAGAATGCTGTA 408843 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 ||| || ||||| |||||||| ||||| |||||||| || |||||| | ||| ||| Sbjct 408844 CATTTCCGAGTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGT 408903 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 || ||||| ||| || |||||||| | ||||||||||| ||||| ||||| || || Sbjct 408904 TACTTGCACCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGC 408963 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 ||||||||| || | ||||| || ||||| | || |||| ||||| | ||| Sbjct 408964 AGCAAAGAAAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCA 409023 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | | | ||||| ||| |||||||| || |||||||| || || || Sbjct 409024 GTCAGACATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGC 409074 >seq1090 Length=275775 Score = 114 bits (126), Expect = 2e-20 Identities = 692/1084 (64%), Gaps = 49/1084 (5%) Strand=Plus/Minus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| | ||||| || | ||| ||||| || || || | | |||| |||||||||| Sbjct 261243 TGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTG 261184 Query 212964 TAGGGCTCGAT-GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 || || |||| ||| || ||||| |||| ||| || ||||| || ||||||||||| Sbjct 261183 TACGGTTCGAAAGCT-TCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGG 261125 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 |||| || || || | || || || | | | || | || | ||||| Sbjct 261124 GGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCA 261065 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 ||||| ||| ||| | |||| ||||||||||||| | || | || || Sbjct 261064 ATCCCAG-----AGATCGGTGGGCA-CCTT---GTTCCACATGTCATATTGAAGTATACC 261014 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 ||||||||| ||||| || | || | ||||| |||| | | |||| || || Sbjct 261013 TTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACA 260954 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || | || ||| | ||||| || ||||||||||| | || | || ||| Sbjct 260953 ACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGC 260894 Query 213263 CTCTGGGGACGTGAAGGGCATCAT-CATGCG--TTGGAACACATCAGCCAGCCCCTGGAC 213319 ||| | | |||| || | |||| | || || | || || | |||||||| Sbjct 260893 CTCCTCGCTTTCGTAGGG-ATAACGCATGAGAATTAGAGTA--TCGGCAAAACCCTGGAC 260837 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAA 213379 || ||||| ||||| | ||||| || ||||| || | ||||| || || || | Sbjct 260836 ACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGGATAGTA 260777 Query 213380 GTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA 213439 |||| || ||||| |||||||| ||||| | | ||||| | || || | Sbjct 260776 GTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTT 260717 Query 213440 CTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAAC----TCAGGCAGGGCGATGCTGG 213495 || | | || | || | | | | ||||||| ||||||| ||| || Sbjct 260716 CTTAA-AGTCAAAA-GTTTTTTCGGGCGT-CACAAACATGTTCAGGCAA----ATGGAGG 260664 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| || || | || | | ||| || || | ||| || ||||||| | Sbjct 260663 CCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAAT 260604 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTT-GCGTTGGCA-GAATCCTT 213613 |||||||| |||||||| | || || || || ||||| ||| | || || ||||| Sbjct 260603 TGCTGCATTTAATGGTGCCAACATTTTGTTGATT--ACTTTTGCGATTACAAGAGTCCTT 260546 Query 213614 GTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGG 213671 | ||||||||||| | || || |||| ||||| | | || ||| ||| || Sbjct 260545 AAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAAT--GGCAAACCAAAGC 260488 Query 213672 TACCTG-GCCTTGACCACCCGCCTGACAGCT---CCGGGCGTAGCCTCGTACTGTTCGTA 213727 |||| ||||| | | || |||| |||| | | ||||| | |||||| Sbjct 260487 G-CCTGCGCCTTAATGGTTC---TGTTAGCTTTGCCGGCCTTT---TCGTATTTTTCGTA 260435 Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG-GGACACA 213786 |||| || ||||| | ||||||||| | ||||| ||||| || | ||||||| Sbjct 260434 AAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATT-TGTGAGGACACA 260376 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 | ||| ||| || |||| ||| || | |||| |||| || || | ||| || | Sbjct 260375 TTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAG 260316 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 | ||| || || |||| | ||| || || | || || | ||| | || Sbjct 260315 CATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAA 260256 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGC 213966 | ||||||||||||| ||||| || |||| |||||||||||| || || || | |||| Sbjct 260255 ACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGC 260196 Query 213967 CGCC 213970 | || Sbjct 260195 CACC 260192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931392581025280