Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1090 107 4e-18 >seq1090 Length=275775 Score = 107 bits (118), Expect = 4e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 221945 TAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACAC 222004 || ||| ||||||| | |||||| | |||| | || |||||||| || |||||| Sbjct 260436 TAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACAC 260377 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 || || ||| | ||| |||| || | |||| || | || || ||||| || Sbjct 260376 ATTAGGGACCAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGA 260317 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || |||||||||| || ||||| || |||| | || || | | ||||||| Sbjct 260316 GCATAGAAAAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAA 260257 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| ||||| | ||||| || |||| |||| ||| | || || || || ||| Sbjct 260256 AACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTG 260197 Query 222185 TTGCCACCCTGATCCAC 222201 ||||||||||| || Sbjct 260196 CCACCACCCTGATCAAC 260180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928704985636480