Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 113 4e-20
seq404 113 4e-20
>seq1094
Length=241507
Score = 113 bits (124), Expect = 4e-20
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 28544 TTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAAC 28603
|||| ||||||||| || ||||| || || |||| ||||||||||||||| ||
Sbjct 166291 TTGTAGAAAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGT 166232
Query 28604 GGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCC 28663
|| ||||| || || | | || ||||| |||||| |||||||| || | ||
Sbjct 166231 AGAGCCTTCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCC 166172
Query 28664 CGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGC 28723
||||||||| | | |||||||| |||||||||||||| ||| | || || |
Sbjct 166171 ACCAGATCAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTC 166112
Query 28724 CGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTA 28763
|| || ||||||||||| || || ||| |||| |||||
Sbjct 166111 AGACTACAACATTCAAAAGGAGTCGACTTTGCATTTGGTA 166072
>seq404
Length=684826
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||||||||| || || ||||||||||| ||||| || || ||| ||||||||
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || | ||| ||||| |||||||| || | ||| |||||||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||| | | || || || ||||| ||||||||||| || || |||| ||||||
Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783
||||||||||||||||| || || |||| || | |||| || || ||
Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGTCCTACGTCTACGTGGTGGTAT 506805
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| |||||||||||||| || ||||||||||| ||| || || |||||
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | || || |||| || |||||||| ||| | || ||| ||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAA-GACAAAGAAGGAATCCCACCAGACCA 506466
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
|||| || | || || || ||||| || | ||||| ||| || | ||||| ||
Sbjct 506467 ACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAA 506526
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765
||||||||||||||||| |||| |||||||
Sbjct 506527 TATTCAAAAAGAATCTACATTGCATTTGGTATT 506559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425342366793918
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |