Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1090 131 8e-26 >seq1090 Length=275775 Score = 131 bits (144), Expect = 8e-26 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| |||||||| ||||| | ||||| || | |||||| || | |||||||| Sbjct 260341 CATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCTCTTCTTT 260282 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||||||||||| ||| || || ||||| || || || ||||| ||||| || || Sbjct 260281 GCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTA 260222 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| ||||| ||| | ||| || ||||| ||||| ||||| | |||| | ||| Sbjct 260221 GATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATT 260162 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159 ||| ||| | ||||| || || || ||| | || ||| || |||| Sbjct 260161 GAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGC 260115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253002863375150