Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq51 123 3e-23 >seq51 Length=1541544 Score = 123 bits (136), Expect = 3e-23 Identities = 344/516 (67%), Gaps = 14/516 (3%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||| || ||||| | ||||||||| ||||| ||||| ||||||||||| || || || Sbjct 1105887 ACACCTATGGGACCCATGCCAGGACCACCACCGCCATGGGGAATACAGAAGGTTTTGTGA 1105828 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| | ||| | ||||| || || |||| || ||| || ||||| ||| Sbjct 1105827 AGATTCAAATGGGACACATCACTGCCGTAATCACCAGGACGACATAGGCCCACCTGGGCA 1105768 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCA---TTGTCATGAACGATCTTACAT 138359 || | ||| |||||||| ||||| || ||||||||| |||| || |||| | || Sbjct 1105767 TTCATATTGGCACCATCCAGATAAACTTGACCACCAAATTTGTGGATAA-GATCACAAAT 1105709 Query 138360 ATCTGTCTGATGTTTGTTTCAAATACA-CCATGAGTCGATGGATATGTAATCATAATACA 138418 || | | | || || ||||||||| ||||| || || ||||| || ||||||| ||| Sbjct 1105708 GTCGGCCACA-GTCTG-CTCAAATACACCCATG-GTTGAGGGATAGGTGATCATAAGACA 1105652 Query 138419 TGAGAGTTCAAATGTAT--TCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTG 138476 || || | | || || | | ||||| | | |||| ||||||||| || Sbjct 1105651 CGATAGATTTTTGGCATGCTCCTCA--GCTTTGTCCCTCAGATGAGCCATGTCTATGCTG 1105594 Query 138477 CCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536 ||||| | || | | |||||||||| || ||||| ||| || ||| Sbjct 1105593 CCATCGGAGAGAATTTTAATGGGTTCAACTTTCATGCCCGCCATTTGGGCAGATGCCGGA 1105534 Query 138537 TTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCC 138595 || || ||||| || || || || ||||| | || || | | || | ||| Sbjct 1105533 TTTGTGCCATGAGCAGATATGGGAATGAGACAAATATGTCGATGGCCTTCGTTACGAT-G 1105475 Query 138596 TTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGG 138655 || |||||| | | || ||| || || ||||| |||||||| | ||||| || || Sbjct 1105474 TTCATGATAAGAGCGAATGGCTCTAAGACCAGCATATTCACCCTGAGCTCCTGAATTGGG 1105415 Query 138656 TTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 || ||||| || ||| |||| || || ||||| Sbjct 1105414 CTGGAATGAGATTTTGTCATAACCGGTAATCTCACA 1105379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578911246265840