Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2111 89.7 6e-13 >seq2111 Length=88771 Score = 89.7 bits (98), Expect = 6e-13 Identities = 244/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| | | || ||||| || || ||| | ||||| || ||| Sbjct 7447 CCTGGCACAGGAAAGACTATGTTGGCTAAAGCCACTGCCGGAGAAGCCAATGTGCCTTTC 7388 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || |||| ||||| | || | ||| |||| |||||||||||||| ||| || | || Sbjct 7387 ATTACAGT-CTCTGGCTCAGAGTTTTTGGAAATGTTTGTTGGTGTTGGTCCCTCTCGTGT 7329 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || || | |||| || || ||| ||||| || || ||| | || || ||||| || Sbjct 7328 ACGTGACATGTTTGCCATGGCACGCAAAAATGCTCCTTGCATTCTGTTTATCGATGAAAT 7269 Query 175494 TGATGCGGTGGGCAAGC-AACGCAGCGCT-GGTGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| ||||| | || |||| ||| | | | || | || || || |||| Sbjct 7268 CGATGCTGTGGG-ACGCAAACGTGGCGGTAAATCCTTTGGCGGC-CATTCGGAACAAGAA 7211 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 | ||| | |||||||| | || |||||||| ||| | | || ||||| Sbjct 7210 AACACACTAAATCAACTTTTGGTGGAAATGGATGGTTTTAATACCACCACAAATGTTGTG 7151 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || | || || || || || |||||||| | ||| | ||| | || || || || ||| Sbjct 7150 GTGCTGGCCGCTACAAACCGTGTGGATATTTTAGATAAAGCCTTGCTGCGTCCAGGACGT 7091 Query 175672 TTTGAT 175677 |||||| Sbjct 7090 TTTGAT 7085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596479801360960