Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq404 150 3e-31
seq1431 131 3e-25
>seq404
Length=684826
Score = 150 bits (166), Expect = 3e-31
Identities = 175/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| | | || | ||||| ||||||||||| ||||| ||||||
Sbjct 506583 ATTTGCATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTG 506524
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| || || || |||| || || | || || || || ||||| |||| ||||||
Sbjct 506523 TAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGG 506464
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || ||||||||||| ||||| ||||||| ||| | |||| ||| ||||| |||
Sbjct 506463 TCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAA 506404
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||| || | || || |||||||| || | ||||||||||| ||||||||
Sbjct 506403 GGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 150 bits (166), Expect = 3e-31
Identities = 175/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | || || |||| ||| | ||||| ||||| ||| |||
Sbjct 506811 ATTTGCATACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTA 506752
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|||||||| || || | || || ||||| || || || ||||| || | |||||||
Sbjct 506751 TAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGA 506692
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || |||||||| ||||| ||||||| || | |||| |||||||| |||
Sbjct 506691 TCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAA 506632
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| |||||||| || || |||||||| || |||| || || || |||||||||||
Sbjct 506631 GGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 134 bits (148), Expect = 2e-26
Identities = 172/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | | ||||| || | ||| | |||| ||||| || ||
Sbjct 509246 AATTTGCATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTT 509187
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || || || | | ||| || ||||| || ||||| || ||||| | |||||
Sbjct 509186 GTAGTCTGACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTG 509127
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|| || || || |||||||||||||| ||||| | ||| | |||| |||||||||||
Sbjct 509126 GTCTGGGGGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGA 509067
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || ||||||| || || ||||| ||||| || || || || || ||||||||
Sbjct 509066 TGGTTCGACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 120 bits (132), Expect = 5e-22
Identities = 170/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| | | ||||| |||| ||| | ||||| || || ||||||
Sbjct 506355 ATTTGCATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTA 506296
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
|| ||||| || || | ||| || | ||||| |||||||| || || | ||||||
Sbjct 506295 TAATCGGACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGA 506236
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || |||||||||||||| || |||| ||| | |||| ||| ||||| ||
Sbjct 506235 TCTGGAGGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAG 506176
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
| ||||| || | || || || || || |||| || || || || || ||||| ||
Sbjct 506175 GGTTCAACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
Score = 100 bits (110), Expect = 5e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| ||| | ||| | || || || || ||||| || || || | | |
Sbjct 509452 CGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCA 509393
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || || ||||| |||||||| || || | || ||||| || || || |||||||||
Sbjct 509392 TCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTA 509333
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| ||||||| || | |||| || ||||| || | || ||||| | || ||
Sbjct 509332 TCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATT 509273
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || | || || || || ||||||||
Sbjct 509272 GTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
>seq1431
Length=173026
Score = 131 bits (144), Expect = 3e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|| || ||||| |||||||| | | ||| || | |||||||||||||| ||||| |
Sbjct 151275 ATGTTGTAGTCTGATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGT 151216
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
||||||||||| || ||||| ||||| || || || |||| |||| |||| || |||
Sbjct 151215 TGTTGATCAGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTA 151156
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
|| || | ||||||||| || || || || || || |||| ||||| ||||| || |||
Sbjct 151155 TCAGACGGCTCAACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGC 151096
Query 193359 ATTTT 193363
|| ||
Sbjct 151095 ATCTT 151091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899518979521440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |