Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq404 150 3e-31 seq1431 131 3e-25 >seq404 Length=684826 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || | ||||| ||||||||||| ||||| |||||| Sbjct 506583 ATTTGCATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTG 506524 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || || |||| || || | || || || || ||||| |||| |||||| Sbjct 506523 TAATCAGACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGG 506464 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| ||||||| ||| | |||| ||| ||||| ||| Sbjct 506463 TCTGGTGGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAA 506404 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || | || || |||||||| || | ||||||||||| |||||||| Sbjct 506403 GGCTCAACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| ||| | ||||| ||||| ||| ||| Sbjct 506811 ATTTGCATACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTA 506752 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | || || ||||| || || || ||||| || | ||||||| Sbjct 506751 TAGTCGGACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGA 506692 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||||| || | |||| |||||||| ||| Sbjct 506691 TCTGGGGGAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAA 506632 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| || || |||||||| || |||| || || || ||||||||||| Sbjct 506631 GGTTCAACTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| || | ||| | |||| ||||| || || Sbjct 509246 AATTTGCATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTT 509187 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || || | | ||| || ||||| || ||||| || ||||| | ||||| Sbjct 509186 GTAGTCTGACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTG 509127 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||||||||| ||||| | ||| | |||| ||||||||||| Sbjct 509126 GTCTGGGGGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGA 509067 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||||| || || ||||| ||||| || || || || || |||||||| Sbjct 509066 TGGTTCGACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | ||||| |||| ||| | ||||| || || |||||| Sbjct 506355 ATTTGCATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTA 506296 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | ||| || | ||||| |||||||| || || | |||||| Sbjct 506295 TAATCGGACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGA 506236 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| || |||| ||| | |||| ||| ||||| || Sbjct 506235 TCTGGAGGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAG 506176 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||||| || | || || || || || |||| || || || || || ||||| || Sbjct 506175 GGTTCAACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| ||| | ||| | || || || || ||||| || || || | | | Sbjct 509452 CGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCA 509393 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||| |||||||| || || | || ||||| || || || ||||||||| Sbjct 509392 TCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTA 509333 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| || | |||| || ||||| || | || ||||| | || || Sbjct 509332 TCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATT 509273 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || || || |||||||| Sbjct 509272 GTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 >seq1431 Length=173026 Score = 131 bits (144), Expect = 3e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| |||||||| | | ||| || | |||||||||||||| ||||| | Sbjct 151275 ATGTTGTAGTCTGATAACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGT 151216 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || ||||| ||||| || || || |||| |||| |||| || ||| Sbjct 151215 TGTTGATCAGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTA 151156 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||||||| || || || || || || |||| ||||| ||||| || ||| Sbjct 151155 TCAGACGGCTCAACTTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGC 151096 Query 193359 ATTTT 193363 || || Sbjct 151095 ATCTT 151091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899518979521440