Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq305 161 1e-34
seq404 138 2e-27
seq1431 96.9 5e-15
>seq305
Length=710094
Score = 161 bits (178), Expect = 1e-34
Identities = 468/709 (66%), Gaps = 13/709 (2%)
Strand=Plus/Plus
Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048
||||||||||||||| | ||| | ||||| ||||| ||||||||||| | | || |
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108
|| | || || ||| ||||| | || || | ||| | ||| ||||||| | ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 18109 --TACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAA 18166
||| | | ||| || | | | | ||| || || | | ||| ||||||
Sbjct 408502 GATACGTTCTCTGCTGGGC--TTCTGCACCAGATACTTA-AACATCA-ATACA-GCAAAA 408556
Query 18167 TCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATT 18226
||| || |||||||| || | ||||| | ||||| || ||||| |||||||||
Sbjct 408557 TCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATT 408616
Query 18227 ATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCA 18286
| || | ||| || | ||| || || || || ||||| | |||||||| || |||
Sbjct 408617 AGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCA 408676
Query 18287 AC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT-GCTCAGTATCCATT 18344
|| ||| || || ||||||| | |||| ||||| | || | | | |||||||
Sbjct 408677 ACAGCA-GCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGA-TATCCATG 408734
Query 18345 TTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAAT 18404
||||| || ||| | | || ||| | || || ||||| || ||||
Sbjct 408735 ACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAAT 408794
Query 18405 CATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA-TACATTTCAGAA 18463
|| || | |||||| ||||| ||||| || || || | |||||||| ||
Sbjct 408795 ATTCACGTTGGTCACGATCTTTAATATAGGTGTCAAT-AAGAATGCTGTACATTTCCGAG 408853
Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523
|| | | |||||||| ||||| || | ||| || | | || || | ||| | |
Sbjct 408854 TGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACC 408913
Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583
|| | ||||||| || || | ||||||||||||||| || || | | || || ||
Sbjct 408914 TCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAA 408973
Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATA 18643
||||| |||| |||||||| | ||||||| || |||| || | ||| ||| |||
Sbjct 408974 GCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATA 409033
Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692
||||| || ||||| ||||| || |||||||| |||| || ||||
Sbjct 409034 TCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
>seq404
Length=684826
Score = 138 bits (152), Expect = 2e-27
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || || | || ||||| ||||| || || || ||||| || || |||
Sbjct 506117 AATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCC 506176
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||||| ||| ||| || ||| || || ||||||||||||||||| ||||||||
Sbjct 506177 TCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGAT 506236
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | ||||| | ||||||||| ||||| |||||| | || || || ||||||
Sbjct 506237 CAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTAT 506296
Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||||| || | || |||||||| ||
Sbjct 506297 A--ATATCCAAAAGGAATCTACACTTCATTTGGT 506328
Score = 138 bits (152), Expect = 2e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || |||| |||||||| || ||||||||||||||| ||
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| |||||| |||||| ||||||||||||||||| || ||||| |||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | || || | ||||| ||||| | |||||| | ||||| ||||| || ||
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| ||||| | || || ||||||||
Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGT 509218
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | |||||||||||||| ||||| || || || || || || ||||
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || ||| ||||| ||||| |||||||| || || ||||| |||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||||| || || |||||||| ||||| |||| || || ||||| |||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 156003 AT 156004
||
Sbjct 506528 AT 506529
Score = 125 bits (138), Expect = 1e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||||| || || |||||||||||| ||
Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| |||||| ||| ||| || ||||| || ||||| || || ||||| ||
Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||| | || ||||| ||| | |||||| | || || ||||||||||||
Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| ||||| |||| || || || ||
Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGT 508990
Score = 116 bits (128), Expect = 5e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||||||||| |||| ||||| || ||||||||||| ||| | ||||| ||| ||||
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || || ||||| ||||| |||||||| || || ||||| |||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||||| || || ||||| | ||||| | || || || || |||||
Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| ||||| | || || ||||| ||
Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGT 506784
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||||||||| || ||||| || ||||| ||| |||
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| || || ||||| ||||||||||||||||| || ||||| ||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
||| | ||||| | |||||| || ||| | ||||||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGAT 509393
>seq1431
Length=173026
Score = 96.9 bits (106), Expect = 5e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| ||||| || ||| | ||||| || || || || || ||||| | ||||| ||
Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
||||||| || ||| || || || || || || ||||| || || || || ||
Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||| | || || | |||||| || ||||| |||||| | || |||||||| ||
Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270
Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040
|| ||| || || | |||||||||||||| || ||||
Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATT 151311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731761834967200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |