Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq305 161 1e-34 seq404 138 2e-27 seq1431 96.9 5e-15 >seq305 Length=710094 Score = 161 bits (178), Expect = 1e-34 Identities = 468/709 (66%), Gaps = 13/709 (2%) Strand=Plus/Plus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||||||||||||||| | ||| | ||||| ||||| ||||||||||| | | || | Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 || | || || ||| ||||| | || || | ||| | ||| ||||||| | || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 18109 --TACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAA 18166 ||| | | ||| || | | | | ||| || || | | ||| |||||| Sbjct 408502 GATACGTTCTCTGCTGGGC--TTCTGCACCAGATACTTA-AACATCA-ATACA-GCAAAA 408556 Query 18167 TCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATT 18226 ||| || |||||||| || | ||||| | ||||| || ||||| ||||||||| Sbjct 408557 TCACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATT 408616 Query 18227 ATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCA 18286 | || | ||| || | ||| || || || || ||||| | |||||||| || ||| Sbjct 408617 AGGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCA 408676 Query 18287 AC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT-GCTCAGTATCCATT 18344 || ||| || || ||||||| | |||| ||||| | || | | | ||||||| Sbjct 408677 ACAGCA-GCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGA-TATCCATG 408734 Query 18345 TTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAAT 18404 ||||| || ||| | | || ||| | || || ||||| || |||| Sbjct 408735 ACAAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAAT 408794 Query 18405 CATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA-TACATTTCAGAA 18463 || || | |||||| ||||| ||||| || || || | |||||||| || Sbjct 408795 ATTCACGTTGGTCACGATCTTTAATATAGGTGTCAAT-AAGAATGCTGTACATTTCCGAG 408853 Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523 || | | |||||||| ||||| || | ||| || | | || || | ||| | | Sbjct 408854 TGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACC 408913 Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583 || | ||||||| || || | ||||||||||||||| || || | | || || || Sbjct 408914 TCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAA 408973 Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATA 18643 ||||| |||| |||||||| | ||||||| || |||| || | ||| ||| ||| Sbjct 408974 GCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATA 409033 Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 ||||| || ||||| ||||| || |||||||| |||| || |||| Sbjct 409034 TCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 >seq404 Length=684826 Score = 138 bits (152), Expect = 2e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | || ||||| ||||| || || || ||||| || || ||| Sbjct 506117 AATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCC 506176 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||| || ||| || || ||||||||||||||||| |||||||| Sbjct 506177 TCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGAT 506236 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||| | ||||||||| ||||| |||||| | || || || |||||| Sbjct 506237 CAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTAT 506296 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||||| || | || |||||||| || Sbjct 506297 A--ATATCCAAAAGGAATCTACACTTCATTTGGT 506328 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||| |||||||| || ||||||||||||||| || Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| |||||| |||||| ||||||||||||||||| || ||||| ||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||||| ||||| | |||||| | ||||| ||||| || || Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || |||||||| Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGT 509218 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||||||||| ||||| || || || || || || |||| Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||||| || || |||||||| ||||| |||| || || ||||| ||| Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 156003 AT 156004 || Sbjct 506528 AT 506529 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||||| || || |||||||||||| || Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||| || ||||| || ||||| || || ||||| || Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | || ||||| ||| | |||||| | || || |||||||||||| Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| |||| || || || || Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGT 508990 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||| ||||| || ||||||||||| ||| | ||||| ||| |||| Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||||| ||||| |||||||| || || ||||| ||| Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || || ||||| | ||||| | || || || || ||||| Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || ||||| || Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGT 506784 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| || ||||| || ||||| ||| ||| Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || || ||||| ||||||||||||||||| || ||||| || Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||| | |||||| || ||| | |||||| Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGAT 509393 >seq1431 Length=173026 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | ||||| || || || || || ||||| | ||||| || Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| || ||| || || || || || || ||||| || || || || || Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | |||||| || ||||| |||||| | || |||||||| || Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || ||| || || | |||||||||||||| || |||| Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATT 151311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731761834967200