Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq1094 170 4e-37
seq404 149 1e-30
seq305 140 6e-28
seq1431 123 5e-23
>seq1094
Length=241507
Score = 170 bits (188), Expect = 4e-37
Identities = 190/251 (76%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357
||| ||| |||||||| | |||||| | ||| ||||| ||||| | ||| ||| || ||
Sbjct 166044 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGA-ATG 166102
Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417
|| || || || || || || |||| ||||||||||| ||||||||||| || | |||
Sbjct 166103 TTGTAGTCTGACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGT 166162
Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477
||||| ||||| || |||||||| ||||| |||||| || ||||| |||| ||
Sbjct 166163 TGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCG 166222
Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| | ||||| || | |||||||||||||| |||| || || | ||| |||||||||
Sbjct 166223 GAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATT 166282
Query 192538 TTATTAGAAAA 192548
|| || ||||
Sbjct 166283 TTTCTACAAAA 166293
>seq404
Length=684826
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||| || ||||| ||||| || |||| ||||| ||||| ||||||
Sbjct 506577 ATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 506518
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| |||||||| | || || | || || ||||| || || |||| |||||| || |||
Sbjct 506517 GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||||||||| ||||| ||||| ||| ||||| || | ||| || | ||
Sbjct 506457 GGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 506398
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | || |||||||||||||| |||||||| | ||| || |||||
Sbjct 506397 ACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 136 bits (150), Expect = 8e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || ||||| | |||| || || ||||||||||||
Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || ||| |||| |||| |||||||| |||||||| || | |||||||| ||
Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||||||||| || || ||| ||||| || | ||| || | |||
Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || | || ||||| || ||||||||||| || | || |||||||| ||
Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| | |||||||| | |||| ||||| ||| || || ||
Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || || |||| |||||||| || || || |||||||| | ||||| || ||
Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||||||||| |||||| ||| ||||| |||| ||| || | |||
Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| || |||||||| || || | || || | || || |||||
Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 127 bits (140), Expect = 4e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | ||| || || | || | ||||| ||||||||||||
Sbjct 509011 ATGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCT 508952
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| ||||| || |||| ||||| ||||||||||| ||||| || | || ||||| ||
Sbjct 508951 GACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGG 508892
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || ||| ||| || || || | ||| || | |||
Sbjct 508891 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCG 508832
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||||| ||| |||||||| ||||| | || || | || || |||||
Sbjct 508831 ACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 107 bits (118), Expect = 4e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
|| || | |||||| | || ||||| | || | || || ||| || || || ||
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
||||| || |||| ||||| ||||| || |||||||| || | || ||||| || ||
Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| |||||||||||||| ||||| || ||||| ||| | ||| || | ||| |||
Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | ||||| || || ||||| || || || | || || |||||
Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 87.8 bits (96), Expect = 4e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| || |||||||| | |||| ||| || ||| || || ||
Sbjct 508783 ATACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 508724
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || |||| ||||| ||||||||||||||||| || | || ||||| ||
Sbjct 508723 GACAGTGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGG 508664
Query 192427 GGTATTCCTTC 192437
|| || |||||
Sbjct 508663 GGAATACCTTC 508653
>seq305
Length=710094
Score = 140 bits (154), Expect = 6e-28
Identities = 460/706 (65%), Gaps = 23/706 (3%)
Strand=Plus/Plus
Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714
||| ||||||||||||| ||| | |||||||| |||||||||||||| | || || |
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774
||| ||||| || || ||||| | ||| |||| || |||| | | |||||| |||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 49775 tatattattttttgataatttatatttaatatgattcgcatatattaa-ACATGCAAAAT 49833
||| || | || | | | | | | ||| | | | || || ||| |||||||
Sbjct 408502 GATA-CGTTCTCTGCTGGGCT-TCTGCACCA-GATACTTAAACATCAATACA-GCAAAAT 408557
Query 49834 CAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 49893
|| ||| ||||| ||||| | ||||| | || || || ||||| || |||||||
Sbjct 408558 CACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTA 408617
Query 49894 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGA 49953
|| | || || | ||| || || || |||||||| | |||||||| || || |
Sbjct 408618 GGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAA 408677
Query 49954 CACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATTTATCATCTAATATCCAATTT 50012
|| ||||| ||||||| | | | ||||| |||| ||| | |||||||
Sbjct 408678 CAGCAGCAAAAGCTATTACACGTTCACCAAA-ATTAGCAGAATCCGATGATATCCATGAC 408736
Query 50013 ATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA---AT 50069
| ||||||||| |||||| |||| | || || ||| |||| || || || |||| ||
Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATAT 408796
Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAG-AATACATTTCAGA 50128
||| || ||| | ||| || | |||||||| ||
Sbjct 408797 TCACGTTGGTCA----CGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGA 408852
Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC-TGAA 50187
|| ||| |||||||| || || || ||| || | ||||| | ||| || |
Sbjct 408853 GTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAG-TTACTTGCA 408911
Query 50188 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 50247
| || | | |||| || || | ||||||| || || ||||| || || || ||||
Sbjct 408912 CCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGA 408971
Query 50248 ATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA---AGATT 50304
| || || || | ||| |||| | ||||||| ||| | | || ||||| |||
Sbjct 408972 AAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGA-- 409029
Query 50305 CAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGC 50350
| ||| || || | ||| ||||| || | ||||||||||||||
Sbjct 409030 -CATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGC 409074
>seq1431
Length=173026
Score = 123 bits (136), Expect = 5e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCA 192381
|| || |||||||| | || | || || || || || || ||||| || || ||
Sbjct 151308 CGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCA 151249
Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441
|| || | ||||| || ||||| ||||| | |||||||||||||| ||||| |||||
Sbjct 151248 TCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTG 151189
Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501
|| || || || |||||||| ||| | ||| |||| || ||||| || ||||||
Sbjct 151188 TCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATG 151129
Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || ||||| ||||| | ||| |||||||| ||
Sbjct 151128 GTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984328106426700
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