Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1094 170 4e-37 seq404 149 1e-30 seq305 140 6e-28 seq1431 123 5e-23 >seq1094 Length=241507 Score = 170 bits (188), Expect = 4e-37 Identities = 190/251 (76%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| |||||||| | |||||| | ||| ||||| ||||| | ||| ||| || || Sbjct 166044 GTTCAATGATACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGA-ATG 166102 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || || || || || || |||| ||||||||||| ||||||||||| || | ||| Sbjct 166103 TTGTAGTCTGACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGT 166162 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||| ||||| || |||||||| ||||| |||||| || ||||| |||| || Sbjct 166163 TGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCG 166222 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||||| || | |||||||||||||| |||| || || | ||| ||||||||| Sbjct 166223 GAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATT 166282 Query 192538 TTATTAGAAAA 192548 || || |||| Sbjct 166283 TTTCTACAAAA 166293 >seq404 Length=684826 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || ||||| ||||| || |||| ||||| ||||| |||||| Sbjct 506577 ATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 506518 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||||||| | || || | || || ||||| || || |||| |||||| || ||| Sbjct 506517 GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| ||||| ||| ||||| || | ||| || | || Sbjct 506457 GGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 506398 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || |||||||||||||| |||||||| | ||| || ||||| Sbjct 506397 ACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 136 bits (150), Expect = 8e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | |||| || || |||||||||||| Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| |||| |||| |||||||| |||||||| || | |||||||| || Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || ||| ||||| || | ||| || | ||| Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | || ||||| || ||||||||||| || | || |||||||| || Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||| | |||| ||||| ||| || || || Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||| || || || |||||||| | ||||| || || Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || |||||||| || || | || || | || || ||||| Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | ||| || || | || | ||||| |||||||||||| Sbjct 509011 ATGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCT 508952 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||| ||||||||||| ||||| || | || ||||| || Sbjct 508951 GACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGG 508892 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| ||| || || || | ||| || | ||| Sbjct 508891 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCG 508832 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| |||||||| ||||| | || || | || || ||||| Sbjct 508831 ACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||| | || ||||| | || | || || ||| || || || || Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| ||||| ||||| || |||||||| || | || ||||| || || Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||||||||| ||||| || ||||| ||| | ||| || | ||| ||| Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||||| || || ||||| || || || | || || ||||| Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || |||||||| | |||| ||| || ||| || || || Sbjct 508783 ATACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 508724 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| ||||| ||||||||||||||||| || | || ||||| || Sbjct 508723 GACAGTGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGG 508664 Query 192427 GGTATTCCTTC 192437 || || ||||| Sbjct 508663 GGAATACCTTC 508653 >seq305 Length=710094 Score = 140 bits (154), Expect = 6e-28 Identities = 460/706 (65%), Gaps = 23/706 (3%) Strand=Plus/Plus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||| ||||||||||||| ||| | |||||||| |||||||||||||| | || || | Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774 ||| ||||| || || ||||| | ||| |||| || |||| | | |||||| ||| Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 49775 tatattattttttgataatttatatttaatatgattcgcatatattaa-ACATGCAAAAT 49833 ||| || | || | | | | | | ||| | | | || || ||| ||||||| Sbjct 408502 GATA-CGTTCTCTGCTGGGCT-TCTGCACCA-GATACTTAAACATCAATACA-GCAAAAT 408557 Query 49834 CAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 49893 || ||| ||||| ||||| | ||||| | || || || ||||| || ||||||| Sbjct 408558 CACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTA 408617 Query 49894 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGA 49953 || | || || | ||| || || || |||||||| | |||||||| || || | Sbjct 408618 GGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAA 408677 Query 49954 CACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATTTATCATCTAATATCCAATTT 50012 || ||||| ||||||| | | | ||||| |||| ||| | ||||||| Sbjct 408678 CAGCAGCAAAAGCTATTACACGTTCACCAAA-ATTAGCAGAATCCGATGATATCCATGAC 408736 Query 50013 ATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA---AT 50069 | ||||||||| |||||| |||| | || || ||| |||| || || || |||| || Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATAT 408796 Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAG-AATACATTTCAGA 50128 ||| || ||| | ||| || | |||||||| || Sbjct 408797 TCACGTTGGTCA----CGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGA 408852 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC-TGAA 50187 || ||| |||||||| || || || ||| || | ||||| | ||| || | Sbjct 408853 GTGAACATTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAG-TTACTTGCA 408911 Query 50188 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 50247 | || | | |||| || || | ||||||| || || ||||| || || || |||| Sbjct 408912 CCTCTTGAGAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGA 408971 Query 50248 ATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA---AGATT 50304 | || || || | ||| |||| | ||||||| ||| | | || ||||| ||| Sbjct 408972 AAGCCAACACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGA-- 409029 Query 50305 CAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGC 50350 | ||| || || | ||| ||||| || | |||||||||||||| Sbjct 409030 -CATATCTTTAGACAGATCCACTTCCTCAACAGTCCAAAATGATGC 409074 >seq1431 Length=173026 Score = 123 bits (136), Expect = 5e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 192322 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCA 192381 || || |||||||| | || | || || || || || || ||||| || || || Sbjct 151308 CGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGTACGACCA 151249 Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || || | ||||| || ||||| ||||| | |||||||||||||| ||||| ||||| Sbjct 151248 TCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTTTG 151189 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || |||||||| ||| | ||| |||| || ||||| || |||||| Sbjct 151188 TCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAATG 151129 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| ||||| | ||| |||||||| || Sbjct 151128 GTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984328106426700