Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq404 154 3e-32
seq1094 149 1e-30
seq305 113 8e-20
>seq404
Length=684826
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | ||| || ||||| ||||| || |||| ||||| |||||| |||||
Sbjct 506577 ATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 506518
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | ||| |||| || | || || ||||| ||||| |||| ||||||||| |||
Sbjct 506517 GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| ||||| ||| ||||| || ||||| || | ||
Sbjct 506457 GGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 506398
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | || |||||||||||||| |||||||| | || || |||||
Sbjct 506397 ACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || | |||||||| | |||| ||||| || || || |||
Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| |||| || | || |||||||| || || || || ||||| | |||||||| ||
Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| |||||| ||| ||||| |||||||| || | |||
Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| || |||||||| || || | || || | ||| || |||||
Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Score = 118 bits (130), Expect = 2e-21
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || ||||| | |||| || || |||||||||||
Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | ||| | || |||| |||||||| ||||| || || | ||||| || ||
Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| || || ||| ||||| || ||||| || | |||
Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || | || ||||| || ||||||||||| || | ||| |||||||| ||
Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | ||| || || | || | ||||| ||||||||||||
Sbjct 509011 ATGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCT 508952
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | || | || ||||| ||||||||||| || || || | || || || ||
Sbjct 508951 GACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGG 508892
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| || ||| ||| || || || ||||| || | |||
Sbjct 508891 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCG 508832
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||||| ||| |||||||| ||||| | || || | ||| || |||||
Sbjct 508831 ACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782
Score = 91.5 bits (100), Expect = 3e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974
|| ||||| ||||| || ||||| || || | || || || || || || |||||||||
Sbjct 509392 TCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTA 509333
Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034
||||| ||||| || ||||| ||| ||||| || | ||| ||||| | |||||
Sbjct 509332 TCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATT 509273
Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || ||||| || || || | ||| || |||||
Sbjct 509272 GTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
>seq1094
Length=241507
Score = 149 bits (164), Expect = 1e-30
Identities = 180/245 (73%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| |||||||| | ||| || | ||| ||||| ||||| | ||| || ||| || ||
Sbjct 166049 ATGATACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAG 166108
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
||||| || | || | || ||||||||||| |||||||| || || | ||||| ||
Sbjct 166109 TCTGACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCT 166168
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || |||||||| ||||| |||||| || ||||| ||||| || || |
Sbjct 166169 GGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGC 166228
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTA 172076
||||| || | |||||||||||||| |||| || || | || ||||||||||| ||
Sbjct 166229 TCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTA 166288
Query 172077 TAAAA 172081
||||
Sbjct 166289 CAAAA 166293
>seq305
Length=710094
Score = 113 bits (124), Expect = 8e-20
Identities = 280/416 (67%), Gaps = 7/416 (2%)
Strand=Plus/Plus
Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016
||| || |||||||||| ||| | ||||||| |||||||||||||| | || || |
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076
||| ||||| || || ||||| | ||| |||| || |||| | | |||||| |||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 39077 tatattattttttgataatttatatttaatatgattcgcatataGTAA-ACATGCAAAAT 39135
||| || | || | | | | | | ||| | | | | || ||| |||||||
Sbjct 408502 GATACG-TTCTCTGCTGGGCT-TCTGCACCA-GATACTTAAACATCAATACA-GCAAAAT 408557
Query 39136 CCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 39195
| ||| ||||||||||| | ||||| | || || || ||||| || |||||||
Sbjct 408558 CACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTA 408617
Query 39196 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCA 39255
|| | || || | ||| || || || |||||||| | |||||||| || || |
Sbjct 408618 GGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAA 408677
Query 39256 CACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATTTATCATCTAAAATCCAATTT 39314
|| ||||| ||||||| | | | ||||| |||| ||| | | |||||
Sbjct 408678 CAGCAGCAAAAGCTATTACACGTTCACCAAA-ATTAGCAGAATCCGATGATATCCATGAC 408736
Query 39315 ATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370
| |||||||| |||||| |||| | || || ||| |||| || || || |||||
Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAA 408792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904999754403600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |