Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq404 154 3e-32 seq1094 149 1e-30 seq305 113 8e-20 >seq404 Length=684826 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || ||||| ||||| || |||| ||||| |||||| ||||| Sbjct 506577 ATGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 506518 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| || | || || ||||| ||||| |||| ||||||||| ||| Sbjct 506517 GACAATGTTCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| ||||| ||| ||||| || ||||| || | || Sbjct 506457 GGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 506398 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || |||||||||||||| |||||||| | || || ||||| Sbjct 506397 ACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | |||||||| | |||| ||||| || || || ||| Sbjct 509239 ATACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCT 509180 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||||||| || || || || ||||| | |||||||| || Sbjct 509179 GACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGG 509120 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 509119 GGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCG 509060 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || |||||||| || || | || || | ||| || ||||| Sbjct 509059 ACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | |||| || || ||||||||||| Sbjct 506349 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCG 506290 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || |||| |||||||| ||||| || || | ||||| || || Sbjct 506289 GACAAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGA 506230 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || ||| ||||| || ||||| || | ||| Sbjct 506229 GGAATGCCTTCTTTATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCA 506170 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | || ||||| || ||||||||||| || | ||| |||||||| || Sbjct 506169 ACCTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATT 506117 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | ||| || || | || | ||||| |||||||||||| Sbjct 509011 ATGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCT 508952 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| ||||||||||| || || || | || || || || Sbjct 508951 GACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGG 508892 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| || || || ||||| || | ||| Sbjct 508891 GGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCG 508832 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| |||||||| ||||| | || || | ||| || ||||| Sbjct 508831 ACTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||| || ||||| || || | || || || || || || ||||||||| Sbjct 509392 TCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTA 509333 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| ||| ||||| || | ||| ||||| | ||||| Sbjct 509332 TCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATT 509273 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || | ||| || ||||| Sbjct 509272 GTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 >seq1094 Length=241507 Score = 149 bits (164), Expect = 1e-30 Identities = 180/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | ||| ||||| ||||| | ||| || ||| || || Sbjct 166049 ATGATACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAG 166108 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| || | || | || ||||||||||| |||||||| || || | ||||| || Sbjct 166109 TCTGACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCT 166168 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| |||||| || ||||| ||||| || || | Sbjct 166169 GGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGC 166228 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTA 172076 ||||| || | |||||||||||||| |||| || || | || ||||||||||| || Sbjct 166229 TCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTA 166288 Query 172077 TAAAA 172081 |||| Sbjct 166289 CAAAA 166293 >seq305 Length=710094 Score = 113 bits (124), Expect = 8e-20 Identities = 280/416 (67%), Gaps = 7/416 (2%) Strand=Plus/Plus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| || |||||||||| ||| | ||||||| |||||||||||||| | || || | Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076 ||| ||||| || || ||||| | ||| |||| || |||| | | |||||| ||| Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 39077 tatattattttttgataatttatatttaatatgattcgcatataGTAA-ACATGCAAAAT 39135 ||| || | || | | | | | | ||| | | | | || ||| ||||||| Sbjct 408502 GATACG-TTCTCTGCTGGGCT-TCTGCACCA-GATACTTAAACATCAATACA-GCAAAAT 408557 Query 39136 CCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTA 39195 | ||| ||||||||||| | ||||| | || || || ||||| || ||||||| Sbjct 408558 CACAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTA 408617 Query 39196 ATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCA 39255 || | || || | ||| || || || |||||||| | |||||||| || || | Sbjct 408618 GGCCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAA 408677 Query 39256 CACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATTTATCATCTAAAATCCAATTT 39314 || ||||| ||||||| | | | ||||| |||| ||| | | ||||| Sbjct 408678 CAGCAGCAAAAGCTATTACACGTTCACCAAA-ATTAGCAGAATCCGATGATATCCATGAC 408736 Query 39315 ATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 | |||||||| |||||| |||| | || || ||| |||| || || || ||||| Sbjct 408737 AAAGCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAA 408792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904999754403600