Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq64 118 3e-21
seq1090 96.9 1e-14
>seq64
Length=1447756
Score = 118 bits (130), Expect = 3e-21
Identities = 194/275 (71%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633
||||||| ||| || | |||||||||||||||||||||| || ||||||||||| ||
Sbjct 275812 TTCCATAGCCTTTATAAGACGACGCTGAATATAACCAGTTTCAGCAGTTTTTACAGCAGT 275871
Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGC 302691
||| || ||||| |||||||||||||||| || || | | || | |||| |
Sbjct 275872 ATCGATAAGACCTTCACGACCACCCATAGCGTGAAAATAAAATTCGGATGGGGTC--AAG 275929
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748
|| ||| | | ||| | || ||||| || | | ||| || || |||| || |||
Sbjct 275930 CCGGCAAGATATGAGTTTTCCACGAAGCCTCTGGACTCAGGACCGTAATCATC---TTTG 275986
Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808
| ||||| |||| ||| | || | || || || || || || || |||||||||
Sbjct 275987 ATGAAGTGGGGCAAGGTGCGCTTACGGAAACCATAGGGAATGCGTTTACCTTCAACGTTC 276046
Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||||| || | ||| | ||| | ||| || |||||
Sbjct 276047 TGCTGACCTACGCAAGCAATAACCTGGGAGATATT 276081
>seq1090
Length=275775
Score = 96.9 bits (106), Expect = 1e-14
Identities = 713/1142 (62%), Gaps = 27/1142 (2%)
Strand=Plus/Minus
Query 155403 GTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTT 155462
|| ||||| |||||||| || ||||| || | || ||||| ||| ||| | ||
Sbjct 260856 GTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTG 260797
Query 155463 GTCTTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACC 155522
| || || ||| || | || ||||| || || || || | ||| ||| ||
Sbjct 260796 GCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACT 260737
Query 155523 TTGGTTAC-GTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581
|| | ||| |||| | |||||| | ||||||| ||||| || | ||||||||
Sbjct 260736 TTAGATACTGTCTTC-AATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTCACAAACATGTT 260678
Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACA 155639
|| | ||| || |||| || || || || | || | || |||| ||||| ||
Sbjct 260677 CAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATC--CGGTGCTGAATATTCAACG 260620
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
|| || ||||| || | || |||||||| | ||| | || ||| ||| |
Sbjct 260619 ATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGA 260560
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
||||||| ||||| |||| ||||| || ||||| || || | || | || | |||
Sbjct 260559 TTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATG 260500
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
| ||| || | | || ||||| |||| | |||| || || |||||
Sbjct 260499 GCAAACCAAAGCGCCTGCGCCTTAATGGTTCTGTTAGCTTTGCCGGCCTTTTCGTATTTT 260440
Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879
|| ||| | | || ||||| | ||| ||||| || || || | ||
Sbjct 260439 TCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGA 260380
Query 155880 CAAAACAGCGACCAAA-----TTTTATTACCGATTACACGCTCCATAAATACATCACTCG 155934
|| | || |||||| |||| || | ||||| |||||| | |||
Sbjct 260379 CACATTAGGGACCAATCGCCGTTTTCTTCC-----ACACGTCGCATAAACAAATCTGGTA 260325
Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGT 155993
||||| |||||||||||| || || || | || ||| || | |||| |||||| |
Sbjct 260324 TCCAAAGAGCATAGAAAAGATCTCTGGCACGATG-CTCTTCTTTGCCGGTATTCTTTTTT 260266
Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053
| || || || || || || | ||| || |||| || || ||||| ||||
Sbjct 260265 AAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCA 260206
Query 156054 TTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110
| |||||||| |||||| || || || ||| |||||||| || | || |||
Sbjct 260205 GGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATG 260146
Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAGCGA 156167
|| | | ||||||||| || ||||| || | || |||| ||| || | ||||
Sbjct 260145 GGCACCAAACCATTGGAGGTTCCATTAGTGC--CGGCTATG-GAAGTTCCCTTAGCGCGA 260089
Query 156168 ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT 156227
| ||| | || | ||||||||| || | |||| ||||| ||| || | ||
Sbjct 260088 ATGCAATGGACATTGATTCCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCC 260029
Query 156228 ACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTT 156287
|||| || ||||| || ||||||||||| | |||| | | || | || |||
Sbjct 260028 ACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGAC 259969
Query 156288 AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTA 156347
||||| || || ||| | || || | ||| || | |||||| |||| ||
Sbjct 259968 AATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGC 259909
Query 156348 TTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATA 156407
| |||| | | || || || | | || | | || ||||||| |
Sbjct 259908 TCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACG 259849
Query 156408 GAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGG 156467
| || | |||| |||||| || || || || ||||| |||| ||| || ||
Sbjct 259848 GCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGA 259789
Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCA 156527
|||| |||||| ||||| ||||| || || || | | ||||||||||| ||| ||
Sbjct 259788 TATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCGTATACA 259729
Query 156528 AT 156529
||
Sbjct 259728 AT 259727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471590516022154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |