Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq64 118 3e-21 seq1090 96.9 1e-14 >seq64 Length=1447756 Score = 118 bits (130), Expect = 3e-21 Identities = 194/275 (71%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || | |||||||||||||||||||||| || ||||||||||| || Sbjct 275812 TTCCATAGCCTTTATAAGACGACGCTGAATATAACCAGTTTCAGCAGTTTTTACAGCAGT 275871 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTAGC 302691 ||| || ||||| |||||||||||||||| || || | | || | |||| | Sbjct 275872 ATCGATAAGACCTTCACGACCACCCATAGCGTGAAAATAAAATTCGGATGGGGTC--AAG 275929 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748 || ||| | | ||| | || ||||| || | | ||| || || |||| || ||| Sbjct 275930 CCGGCAAGATATGAGTTTTCCACGAAGCCTCTGGACTCAGGACCGTAATCATC---TTTG 275986 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 | ||||| |||| ||| | || | || || || || || || || ||||||||| Sbjct 275987 ATGAAGTGGGGCAAGGTGCGCTTACGGAAACCATAGGGAATGCGTTTACCTTCAACGTTC 276046 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| || | ||| | ||| | ||| || ||||| Sbjct 276047 TGCTGACCTACGCAAGCAATAACCTGGGAGATATT 276081 >seq1090 Length=275775 Score = 96.9 bits (106), Expect = 1e-14 Identities = 713/1142 (62%), Gaps = 27/1142 (2%) Strand=Plus/Minus Query 155403 GTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTT 155462 || ||||| |||||||| || ||||| || | || ||||| ||| ||| | || Sbjct 260856 GTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTG 260797 Query 155463 GTCTTCTTGTTTGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACC 155522 | || || ||| || | || ||||| || || || || | ||| ||| || Sbjct 260796 GCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACT 260737 Query 155523 TTGGTTAC-GTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581 || | ||| |||| | |||||| | ||||||| ||||| || | |||||||| Sbjct 260736 TTAGATACTGTCTTC-AATTTCTTAAAGTCAAAAGTTTTTTCGGGCGTCACAAACATGTT 260678 Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACA 155639 || | ||| || |||| || || || || | || | || |||| ||||| || Sbjct 260677 CAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATC--CGGTGCTGAATATTCAACG 260620 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 || || ||||| || | || |||||||| | ||| | || ||| ||| | Sbjct 260619 ATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGA 260560 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 ||||||| ||||| |||| ||||| || ||||| || || | || | || | ||| Sbjct 260559 TTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATG 260500 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 | ||| || | | || ||||| |||| | |||| || || ||||| Sbjct 260499 GCAAACCAAAGCGCCTGCGCCTTAATGGTTCTGTTAGCTTTGCCGGCCTTTTCGTATTTT 260440 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 || ||| | | || ||||| | ||| ||||| || || || | || Sbjct 260439 TCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGA 260380 Query 155880 CAAAACAGCGACCAAA-----TTTTATTACCGATTACACGCTCCATAAATACATCACTCG 155934 || | || |||||| |||| || | ||||| |||||| | ||| Sbjct 260379 CACATTAGGGACCAATCGCCGTTTTCTTCC-----ACACGTCGCATAAACAAATCTGGTA 260325 Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGT 155993 ||||| |||||||||||| || || || | || ||| || | |||| |||||| | Sbjct 260324 TCCAAAGAGCATAGAAAAGATCTCTGGCACGATG-CTCTTCTTTGCCGGTATTCTTTTTT 260266 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 | || || || || || || | ||| || |||| || || ||||| |||| Sbjct 260265 AAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCA 260206 Query 156054 TTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 | |||||||| |||||| || || || ||| |||||||| || | || ||| Sbjct 260205 GGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATG 260146 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA---CCAGATGAGCGA 156167 || | | ||||||||| || ||||| || | || |||| ||| || | |||| Sbjct 260145 GGCACCAAACCATTGGAGGTTCCATTAGTGC--CGGCTATG-GAAGTTCCCTTAGCGCGA 260089 Query 156168 ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT 156227 | ||| | || | ||||||||| || | |||| ||||| ||| || | || Sbjct 260088 ATGCAATGGACATTGATTCCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCC 260029 Query 156228 ACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTT 156287 |||| || ||||| || ||||||||||| | |||| | | || | || ||| Sbjct 260028 ACAGACTTAAAAATGCCCTCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGAC 259969 Query 156288 AATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTA 156347 ||||| || || ||| | || || | ||| || | |||||| |||| || Sbjct 259968 AATTGTGGACGATTTGTGGCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGC 259909 Query 156348 TTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATA 156407 | |||| | | || || || | | || | | || ||||||| | Sbjct 259908 TCGGACAACCAGTTATAAGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACG 259849 Query 156408 GAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGG 156467 | || | |||| |||||| || || || || ||||| |||| ||| || || Sbjct 259848 GCCACACGCATCAGCATATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGA 259789 Query 156468 TATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCA 156527 |||| |||||| ||||| ||||| || || || | | ||||||||||| ||| || Sbjct 259788 TATGAGCGTTCTAGAGTCTTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCGTATACA 259729 Query 156528 AT 156529 || Sbjct 259728 AT 259727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471590516022154