Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1090 304 1e-77 seq1094 170 2e-37 seq1431 167 2e-36 seq404 156 4e-33 >seq1090 Length=275775 Score = 304 bits (336), Expect = 1e-77 Identities = 1196/1861 (64%), Gaps = 59/1861 (3%) Strand=Plus/Minus Query 138156 ATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGT 138215 ||| ||||| || | ||| |||| || |||||||| ||||||| ||||||||| ||||| Sbjct 261583 ATCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGT 261524 Query 138216 TTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGTTT 138275 || | ||| || ||||| || | ||||| ||||| | | |||| | || | Sbjct 261523 CTTAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTC 261464 Query 138276 CGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCAT 138335 |||| | ||| || || |||||||| || || |||||||| || |||||| ||||| Sbjct 261463 GGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT 261404 Query 138336 GTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATGTCG 138395 ||||| | || || ||||| || || ||||| || || || || | | Sbjct 261403 TTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTT 261344 Query 138396 CGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTC 138455 || ||| | || ||||| ||| || | | ||| || |||| |||| || Sbjct 261343 GGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTC 261284 Query 138456 ATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAA 138515 || | | || | | | | |||| || || | || || || | | | || Sbjct 261283 CTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAA 261224 Query 138516 TTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTT 138575 |||||| | | ||| || || |||||||| ||| | || || || | ||| || Sbjct 261223 TTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATT 261164 Query 138576 GTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCG 138635 ||| |||| ||| || || || | || || |||||| |||| | || ||||| || Sbjct 261163 GTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCG 261104 Query 138636 TAAACCGTGAAGCTTG---ATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGG 138692 || ||| || ||| |||| |||||| || | | ||| ||||| | |||| | || Sbjct 261103 TACACCATGT---TTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTGGG 261047 Query 138693 TTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGA 138752 ||||||||||| || || || | || || || | || || ||| |||| Sbjct 261046 CACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGT 260987 Query 138753 ATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAAT 138812 || || |||| | || ||||| || || || || | |||||||||||||| Sbjct 260986 TTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAAT 260927 Query 138813 AGTTTCGGCAATCTGCTGATTGAGCAATCG--GGCCTCGGCGCTCTCGTACGGCATGCGG 138870 |||||| || || ||||| | | | | |||||| |||| ||||| || || Sbjct 260926 AGTTTCAAATATTTGTTGATTCA--ATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGC 260869 Query 138871 AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGA 138930 | | | | | ||||| | || || || || | || | || ||||| | ||| Sbjct 260868 ATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGA 260809 Query 138931 TTTGACGCTTTTGCGGCTTCG---ATAGGATAATAGTTTACATCGATGATTTTGTTTAAA 138987 || || |||| ||| || | ||||| ||||| ||||| ||||||||||| | | Sbjct 260808 TTAGA---TTTTCTGGCCTCCTGCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGA 260752 Query 138988 TTTCGCACGACCACCTTAG-TCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTT 139046 || ||| | || || |||| | | | ||| ||| | ||| || | || || Sbjct 260751 TTGCGCGCCACGACTTTAGATACTGT-CTTCAATTTCTTAAAGTCAAAAGTT------TT 260699 Query 139047 GTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCAC 139106 ||| | |||| ||||| |||| | ||||| ||||| | |||||| || || | Sbjct 260698 TTCG-----GGCGTC-ACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGAT 260645 Query 139107 TTCGTCGGGGTCGCTG--TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 ||| || || |||| ||||| || ||||| | |||||||| || || || || || Sbjct 260644 TTCATCCGGT--GCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTG 260587 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || | |||||||||||| ||||| || ||||||| || || | ||||| || || || Sbjct 260586 CCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTT 260527 Query 139225 CCAGTTTCCACTTGTGTCTCTATAATG--AATTTGAACAAGTCCCTAGCTTGTATTTGAC 139282 |||||||| ||||| | ||||||||| || | ||| | | || | || Sbjct 260526 CCAGTTTCTACTTGGGATTCTATAATGGCAA----ACCAAAGCGCCTGCGCCTTAATGGT 260471 Query 139283 GCACGTAAAGTTCGTCGCGC---TCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGT 139339 | || | || | || | ||||| |||||||| || | ||| ||| |||||| Sbjct 260470 TC-TGTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCC 260412 Query 139340 AGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCT 139399 || | ||| || | |||| |||| ||||||||| || ||||| ||||||| | | Sbjct 260411 AGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTT 260352 Query 139400 TGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCT 139459 || || | ||| |||| ||| || ||||| | ||| | | | ||| | || | Sbjct 260351 CCACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGAT 260292 Query 139460 TATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATG 139519 ||||| || | || ||| | | | || ||||| | ||| | ||||| | Sbjct 260291 GCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAG 260232 Query 139520 GTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTA 139576 |||||| |||||||| | ||| || |||||| ||||| ||||| |||| ||| Sbjct 260231 GTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTG 260172 Query 139577 CAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTAC 139636 || ||||||||||||| | ||||| ||| ||| ||| | | ||||| || |||| | Sbjct 260171 CAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGC--C 260114 Query 139637 GG--ATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCA 139692 || |||| | ||| | ||| || | | ||| |||||||| || || || || | Sbjct 260113 GGCTATGGAA--GTTCCCTTAGCGCGAATGCAATGGACATTGATTCCAATACCTCCAGCT 260056 Query 139693 AATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCC 139752 ||||||| || | | | || | | | || | || || || ||| | Sbjct 260055 GATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCCTCAATAGAATCGGCA 259996 Query 139753 TGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGA 139812 ||| || | || || || || || | ||| || | || ||| | || ||||||| Sbjct 259995 ACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAACAAT 259936 Query 139813 GTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTC 139872 || || || || || || | | |||| | | | || ||||| ||||| Sbjct 259935 GTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAGTTATAAGTTTCAATGGCCGAA 259876 Query 139873 ACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCG 139932 | || ||| ||| || ||||| || | || ||||||||||||||||| ||||||| Sbjct 259875 TCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCG 259816 Query 139933 GCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGT 139990 || | | || | ||||| ||||| | ||| ||||| ||||| | ||||||| Sbjct 259815 GCAATCTTACCATTCATTTTCAATAGATATGAGCGT--TCTAGAGTCTTAAATCCAAAGT 259758 Query 139991 A 139991 | Sbjct 259757 A 259757 >seq1094 Length=241507 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || |||||||||||||| ||||| | || ||||| | || Sbjct 166281 ATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCTTCC 166222 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||||||||||||||| || || || |||||| Sbjct 166221 GACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 166162 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||||||||| || ||||| |||||||| | | | ||||||| || ||| Sbjct 166161 CAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTACAAC 166102 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| ||||| | || ||||| Sbjct 166101 ATTCAAAAGGAGTCGACTTTGCATTTGGT 166073 >seq1431 Length=173026 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| |||| || || || |||||||| ||||| || | | Sbjct 151093 GATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTC 151152 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| ||||| || |||||||| ||||| || || ||||| Sbjct 151153 TGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGATCA 151212 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| || |||||||| |||||||| || ||| | | | ||||| || || Sbjct 151213 ACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAA 151272 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| ||||||||||| || || || || || ||||||||||| || |||| Sbjct 151273 CATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGGCG 151322 >seq404 Length=684826 Score = 156 bits (172), Expect = 4e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || |||| || || || || || | || || ||| || | Sbjct 506120 ATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCCTCT 506179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 506180 GATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 506239 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||||||||| ||||||||||| ||| | | | |||| |||||||| Sbjct 506240 CAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTATAAT 506299 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| ||||| || ||||| Sbjct 506300 ATCCAAAAGGAATCTACACTTCATTTGGT 506328 Score = 140 bits (154), Expect = 3e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || || || || |||||| | ||||| ||| || | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || || || || ||||| |||||||| || || || ||||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 |||||||||||||||||||| |||||| |||| ||| ||| ||| |||| || || Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCG---CACATTGTCGGACTAC 509414 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| || |||||||| ||||| || |||||| | || | |||||||||| Sbjct 509415 AACATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGGCG 509466 Score = 136 bits (150), Expect = 4e-27 Identities = 159/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || ||||| || || | ||||| ||| | || Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| |||||||| ||||| || || || ||||| Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 |||||||||||||| || || |||||| |||| ||| ||| ||| ||||||||||| Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCG---TACATTGTCAGATTAT 508958 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || |||||||| || |||||||| Sbjct 508959 AATATCCAGAAAGAATCGACCCTCCACTTGGT 508990 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || |||| || |||||||| || || ||||| ||| | | Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| || || || || |||||||||||||| || || || |||||| Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || |||||||| || || || || || |||| || || ||| |||| || ||||| Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGA-CGGACGTACATTGTCCGACTATAA 506754 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||| ||||| |||||||| ||||| Sbjct 506755 CATTCAAAAAGAATCTACACTACATTTGGT 506784 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| | || |||||||| || || | || || || | | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| || || ||||||||||||||||| || || || ||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || || || || ||||| || || | ||| |||| ||||| || Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| ||||| ||| | || ||||| ||||| | || || ||| Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGCCTTCGTGGTGGC 506575 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/118 (77%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 24803 GAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--T 24860 ||||| || || || ||||| ||||||||||||||||| || |||||| |||| ||| | Sbjct 508653 GAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGGT 508712 Query 24861 CGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || | || |||| || || ||||| || ||||| || || || || || || ||||| Sbjct 508713 CG-TACAC-TGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCG 508768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449829879163760