Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq404 104 2e-17 seq11 100 2e-16 seq1094 98.7 8e-16 seq1431 95.1 1e-14 >seq404 Length=684826 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| || || || |||||||| ||| | || |||||| Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| ||||||||||| | || || ||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| || || || ||||| || || | ||||| || | |||||||| Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||||||||||||| ||||| |||| || Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATT 506559 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || || || ||||||||||| ||| ||||| |||||| Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| |||||| ||||| |||||| | ||| || ||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || || || ||| |||| |||| | ||| || | || |||||| Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || ||||| Sbjct 506984 ATCCAGAAGGAGTCTAC 507000 >seq11 Length=2084484 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 || ||||| || || || || || || || ||||| || || || ||||||| | ||| Sbjct 1814253 TGAGTTTGGGCTCCTAGTTCACATCCAAAATACTTGGTTGGATAGGTGGCCGGTCTGCCA 1814194 Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 | ||| |||| | || | ||| ||||| || || || || || || || || || ||| Sbjct 1814193 ATGGCCCTGGCCACATCAGCCATATTGACAATAACGGTTTTAATACCATTTCCTTTGCCT 1814134 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 || || || || || | |||||||| ||||| ||||| ||||| ||||||||| Sbjct 1814133 TCAACTTTAGCCTGAATCCTAGGCATTTTATAGCGATAGAAAATGTCCGTGACATTGCGG 1814074 Query 34624 TTAACGTTCACAGTCCCCAT 34643 || || || || || ||||| Sbjct 1814073 TTGACATTGACGGTACCCAT 1814054 >seq1094 Length=241507 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || |||||||| || ||||||| |||||||||||| | || |||||| Sbjct 166284 AAAATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCT 166225 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || || || || ||||||||||| | || ||| Sbjct 166224 TCCGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 166165 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| || ||||| ||||||||| | || || | || ||| Sbjct 166164 CAACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTAC 166105 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||||| || || || ||||| |||| Sbjct 166104 AACATTCAAAAGGAGTCGACTTTGCATTTGGT 166073 >seq1431 Length=173026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||||||||||||||| ||||| |||||||| | ||| ||||| Sbjct 151091 AAGATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCG 151150 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | ||||| |||||| |||||||| || | || ||| Sbjct 151151 TCTGATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGAT 151210 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| || |||||||| || |||| | || | | || ||| Sbjct 151211 CAACAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTAC 151270 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||| ||| | || | || || || |||| || || Sbjct 151271 AACATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGG 151320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412781010592706