Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1094 98.7 6e-16 seq404 89.7 3e-13 >seq1094 Length=241507 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || | | |||| |||| |||| ||| || || || || Sbjct 166090 CTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAA 166149 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| ||||| || ||| | || | || || ||||| | ||||| ||||| Sbjct 166150 GATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATT 166209 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | ||| || || | ||| ||||| || || || |||||||| || Sbjct 166210 TTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGAC 166269 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 166270 AAAGATCTGCAT 166281 >seq404 Length=684826 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| ||||| || | |||| |||| |||| |||||| ||||||||| Sbjct 509200 TCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAG 509141 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | ||||| |||||| | || | || || || || | ||||| ||| || | Sbjct 509140 ATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTT 509081 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||||| || | || ||||| ||||| || |||||||| || Sbjct 509080 TCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACG 509021 Query 34967 AAGATCTGCATG 34978 ||||| |||||| Sbjct 509020 AAGATTTGCATG 509009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325645000713998