Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq404 127 3e-24
>seq404
Length=684826
Score = 127 bits (140), Expect = 3e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | ||||||||||| || || | || || |||| ||
Sbjct 509011 TGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCCG 509070
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
||||||| ||||||| ||| |||||| ||| ||||||||||||||| || || ||||
Sbjct 509071 ATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAAC 509130
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || || || || || ||||| || ||| | | || || |||| || || |
Sbjct 509131 AACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAACA 509190
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || |||||||| || ||||||||||
Sbjct 509191 TCCAGAAAGAATCTACCCTCCATTTAGT 509218
Score = 120 bits (132), Expect = 5e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || |||||||| || ||| | || || |||| ||
Sbjct 508783 TGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCCG 508842
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||| || ||| ||| || ||| || ||||| ||||| || ||||| |
Sbjct 508843 ATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAGC 508902
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || || || |||||||| || || ||| | | || || ||||||||||||
Sbjct 508903 AACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAATA 508962
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240
| || ||||||||||| |||| || |||
Sbjct 508963 TCCAGAAAGAATCGACCCTCCACTTGGTA 508991
Score = 118 bits (130), Expect = 2e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||||||| | || |||||||| |||||||| || || | || || |||| | |
Sbjct 506577 TGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCTG 506636
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
||||||| ||||||| || ||||| ||| |||||||| ||||| || |||||||
Sbjct 506637 ATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAAC 506696
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| | | ||||| || || || ||||| || || | || || | || ||||| |
Sbjct 506697 AGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAACA 506756
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||| || | ||||| || |||| || | || ||||
Sbjct 506757 TTCAAAAAGAATCTACACTACATTTGGTCCTACGTCTACGTGGTGGTA 506804
Score = 114 bits (126), Expect = 2e-20
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || ||| | || |||||||| || || || || || | || || |||| |
Sbjct 506121 TGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCCTCTG 506180
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| ||| || || ||| ||||||||||||||| || |||||||
Sbjct 506181 ATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAAC 506240
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || ||||| |||||||| | || ||| | || || | ||||||||||
Sbjct 506241 AACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTATAATA 506300
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| ||||| || | ||||| ||
Sbjct 506301 TCCAAAAGGAATCTACACTTCATTTGGT 506328
Score = 111 bits (122), Expect = 2e-19
Identities = 153/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || |||||||||| || || ||||| || || | || || || | | |
Sbjct 506349 TGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCTG 506408
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| ||| ||||| ||| |||||||| || ||||| || ||||
Sbjct 506409 ATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAAC 506468
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||| || || || || | || || |||| || | ||||| ||||
Sbjct 506469 AGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAATA 506528
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| ||||||||||| || | ||||| ||||| ||
Sbjct 506529 TTCAAAAAGAATCTACATTGCATTTGGTATTGCG 506562
Score = 105 bits (116), Expect = 1e-17
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || || || ||||| |||||||| | || || |||| |
Sbjct 509239 TGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCTG 509298
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| || ||||| ||| ||||||||||||||| || ||||| |
Sbjct 509299 ATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAGC 509358
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || ||||| || ||||| || || ||| | | || || | || || || |
Sbjct 509359 AACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAACA 509418
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| || || ||||| || ||||||| ||
Sbjct 509419 TCCAGAAGGAATCAACACTCCATTTGGT 509446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786048062302640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |