Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq404 167 2e-36 seq1094 161 8e-35 seq1431 152 4e-32 seq373 93.3 3e-14 >seq404 Length=684826 Score = 167 bits (184), Expect = 2e-36 Identities = 171/218 (78%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || |||||||| || || |||||||||||||||||||| || | ||||| | || Sbjct 506791 ACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATG-TACGTC 506733 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || | ||| |||||||| | ||||| | || ||||| || |||||||| |||| Sbjct 506732 CGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTT 506673 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| |||||| | || ||| |||||| ||| |||||| |||| ||||| || || Sbjct 506672 TGTCTTG-AATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTG 506614 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| || ||||| ||||| ||||| Sbjct 506613 ATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 147 bits (162), Expect = 2e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| | | ||| ||||||||||| || || ||||| || || ||||| || |||| | Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| |||||| ||| || | |||||||| ||| | ||||| | ||||||||| || || Sbjct 509404 AAT-GTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGG 509346 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || ||||| ||||| |||||| | |||||| |||||| || ||||| |||| | Sbjct 509345 AATGCCTTCTTTATCTTG-AATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCA 509287 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || || || ||||| || || || || || || ||||| Sbjct 509286 CTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 138 bits (152), Expect = 9e-28 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||| ||||| || |||||||| | | ||| || Sbjct 506335 ACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCC 506276 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| || ||| | ||||| | ||| ||||| || ||||| || ||||| Sbjct 506275 ATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 506216 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| ||| |||| | || ||||| |||| || || | || | Sbjct 506215 ATCTTG-AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGA 506157 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 | || ||||||||||| || || || || |||||||| || || Sbjct 506156 TGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATTGAA 506114 Score = 125 bits (138), Expect = 6e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 |||| |||||||| | || |||||||||||||| || ||||| | ||||| | || Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTT-CGCCC 506504 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||||| | ||||||| || || || || || || || ||||| Sbjct 506503 GTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTT 506444 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||| ||| |||| | || |||||| | || || || | || | Sbjct 506443 GTCTTG-AATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGA 506385 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| || ||||| ||||| || ||||| Sbjct 506384 TGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| || ||||| || || || || || || ||||| || || | | || ||| Sbjct 507019 ACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACC 506960 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || ||||| || | ||||| | || || || || ||||| || || || Sbjct 506959 ATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTT 506900 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||| || |||| | ||||| ||| | || ||||| || || | Sbjct 506899 GTCTTG-AATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGA 506841 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||||||||| ||||| || || || || ||||| Sbjct 506840 TGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 >seq1094 Length=241507 Score = 161 bits (178), Expect = 8e-35 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || || || ||||||||||| || || | | ||||||| Sbjct 166066 ACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACC 166125 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||||||||||||| | ||||| | ||| ||||| || || ||||| ||||| Sbjct 166126 ATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTT 166185 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| |||| | |||||| ||| | ||||| || | || || Sbjct 166186 GTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAAT 166245 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || |||| ||| || ||||| ||||||||||| Sbjct 166246 GGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284 >seq1431 Length=173026 Score = 152 bits (168), Expect = 4e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| |||| || ||||||||||| ||||| ||||| ||||| || || | Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || ||||| || ||| |||| || | ||| ||||| || ||| Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || ||| || | || ||| |||||| || ||||| | || || Sbjct 151200 ATTCCCTCTTTGTCCTG-AATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAAC 151142 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||| || || || ||||| ||||| ||||| ||||| |||||||| || Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 >seq373 Length=651167 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 88949 GGTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGCG 89008 ||| | |||||||| ||||| ||||||| ||| |||| | || || |||| || || Sbjct 261372 GGTCTACATGGTTTCCATGTTCACGAATTTGGTGACAATACCAATGGCTGCATTTCTGCC 261431 Query 89009 GGCGAACATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACGCTTTAATGAAACAT 89068 ||| |||||||||||||| ||| | ||| || || || || || | | |||| Sbjct 261432 GGCCCACATTTCAATCCCAAGGGTAAGGAACATGGTGCACCTTGCGATGAGAACCGACAT 261491 Query 89069 GTTGGTGATTTGGGAAATGTTGAA 89092 |||||||||||||| ||||||||| Sbjct 261492 GTTGGTGATTTGGGCAATGTTGAA 261515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385162664507922