Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq404 167 2e-36
seq1094 161 8e-35
seq1431 152 4e-32
seq373 93.3 3e-14
>seq404
Length=684826
Score = 167 bits (184), Expect = 2e-36
Identities = 171/218 (78%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629
||| || |||||||| || || |||||||||||||||||||| || | ||||| | ||
Sbjct 506791 ACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATG-TACGTC 506733
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
|| || | ||| |||||||| | ||||| | || ||||| || |||||||| ||||
Sbjct 506732 CGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTT 506673
Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748
||||||| |||||| | || ||| |||||| ||| |||||| |||| ||||| || ||
Sbjct 506672 TGTCTTG-AATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTG 506614
Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| || ||||| || ||||| ||||| |||||
Sbjct 506613 ATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 147 bits (162), Expect = 2e-30
Identities = 173/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618
||||| | | ||| ||||||||||| || || ||||| || || ||||| || |||| |
Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
||| |||||| ||| || | |||||||| ||| | ||||| | ||||||||| || ||
Sbjct 509404 AAT-GTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGG 509346
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
||| || ||||| ||||| |||||| | |||||| |||||| || ||||| |||| |
Sbjct 509345 AATGCCTTCTTTATCTTG-AATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCA 509287
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| | || || || || ||||| || || || || || || |||||
Sbjct 509286 CTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 138 bits (152), Expect = 9e-28
Identities = 166/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||||||||| || ||||| ||||| || |||||||| | | ||| ||
Sbjct 506335 ACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCC 506276
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || ||||| || ||| | ||||| | ||| ||||| || ||||| || |||||
Sbjct 506275 ATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 506216
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||||| ||| || | ||| ||| |||| | || ||||| |||| || || | || |
Sbjct 506215 ATCTTG-AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGA 506157
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792
| || ||||||||||| || || || || |||||||| || ||
Sbjct 506156 TGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATATTGAA 506114
Score = 125 bits (138), Expect = 6e-24
Identities = 161/217 (74%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630
|||| |||||||| | || |||||||||||||| || ||||| | ||||| | ||
Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTT-CGCCC 506504
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || || || |||||||| | ||||||| || || || || || || || |||||
Sbjct 506503 GTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTT 506444
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| |||||| | ||| ||| |||| | || |||||| | || || || | || |
Sbjct 506443 GTCTTG-AATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGA 506385
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||| ||||| || ||||| ||||| || |||||
Sbjct 506384 TGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||||| || ||||| || || || || || || ||||| || || | | || |||
Sbjct 507019 ACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACC 506960
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || ||||| || | ||||| | || || || || ||||| || || ||
Sbjct 506959 ATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTT 506900
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | ||| || |||| | ||||| ||| | || ||||| || || |
Sbjct 506899 GTCTTG-AATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGA 506841
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| ||||||||||| ||||| || || || || |||||
Sbjct 506840 TGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
>seq1094
Length=241507
Score = 161 bits (178), Expect = 8e-35
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || |||||||| | || || || ||||||||||| || || | | |||||||
Sbjct 166066 ACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACC 166125
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | ||||||||||||| | ||||| | ||| ||||| || || ||||| |||||
Sbjct 166126 ATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTT 166185
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| |||||| |||| | |||||| ||| | ||||| || | || ||
Sbjct 166186 GTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAAT 166245
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
||||| || |||| ||| || ||||| |||||||||||
Sbjct 166246 GGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTT 166284
>seq1431
Length=173026
Score = 152 bits (168), Expect = 4e-32
Identities = 174/231 (75%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | ||| |||| || ||||||||||| ||||| ||||| ||||| || || |
Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || ||| ||| || || ||||| || ||| |||| || | ||| ||||| || |||
Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||||||||| || ||| || | || ||| |||||| || ||||| | || ||
Sbjct 151200 ATTCCCTCTTTGTCCTG-AATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAAC 151142
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|||||| || || || ||||| ||||| ||||| ||||| |||||||| ||
Sbjct 151141 TTCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091
>seq373
Length=651167
Score = 93.3 bits (102), Expect = 3e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 88949 GGTTTGCATGGTTTTCATGTGCACGAATATGGCGACACGAGTAACGGATGCACGTCGGCG 89008
||| | |||||||| ||||| ||||||| ||| |||| | || || |||| || ||
Sbjct 261372 GGTCTACATGGTTTCCATGTTCACGAATTTGGTGACAATACCAATGGCTGCATTTCTGCC 261431
Query 89009 GGCGAACATTTCAATCCCACGGGCATGGATCACGGCGCGCCCGACGCTTTAATGAAACAT 89068
||| |||||||||||||| ||| | ||| || || || || || | | ||||
Sbjct 261432 GGCCCACATTTCAATCCCAAGGGTAAGGAACATGGTGCACCTTGCGATGAGAACCGACAT 261491
Query 89069 GTTGGTGATTTGGGAAATGTTGAA 89092
|||||||||||||| |||||||||
Sbjct 261492 GTTGGTGATTTGGGCAATGTTGAA 261515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385162664507922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |