Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq404 187 5e-42 seq1431 161 2e-34 seq1094 138 2e-27 >seq404 Length=684826 Score = 187 bits (206), Expect = 5e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || || |||||||| || || ||||||||||| || | | | || Sbjct 506335 ACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCC 506276 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || ||||| || |||||||| | | ||||||||||||||| || ||||| || Sbjct 506275 ATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 506216 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| ||||| ||||||||||| |||||| ||||| || ||||| || || Sbjct 506215 ATCTTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGAT 506156 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| || || |||||||| Sbjct 506155 GGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCAT 506120 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || |||| ||||||||||| || ||||| |||||||| | ||| ||| Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| || || | || ||||| ||||| || |||||||| || Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || ||||| ||||||||||| |||||| ||| || || ||||| || || Sbjct 506442 TCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATG 506383 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || |||||||| || ||||| Sbjct 506382 GTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || ||||||||||| ||||||||||| || | | | ||| Sbjct 508997 ACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTGACAATGTACGACC 508938 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||| ||||| ||||| | | ||| |||||||| || || |||||||| Sbjct 508937 ATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGGGAATACCTTCCTT 508878 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 508877 GTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGACTTCTAAAGTGAT 508818 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||| ||||| || || || ||||| Sbjct 508817 GGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCAT 508782 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || ||||| || || |||||||||||||| || || || || | Sbjct 509238 TACCACCACGTAGACGAAGGACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTG 509179 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| | ||| || || || ||||||| | |||||| ||||| | Sbjct 509178 ACAAAGTGCGACCATCTTCCAATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGG 509119 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| |||||||| || ||||| ||||| | Sbjct 509118 GAATGCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGA 509059 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || ||||||| ||||| || || || ||||| Sbjct 509058 CTTCTAATGTGATGGTTTTTCCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || || ||||| ||||| || || || || || Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||||| || |||||||| | | ||| |||||||| || Sbjct 509404 AATGTGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGA 509345 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||||||||| || || || |||||||| || |||||| ||||| ||| Sbjct 509344 ATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACT 509285 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 509284 TCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || ||||||||||| || || ||||| || | Sbjct 506804 TACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGG 506745 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| || ||||| || || | | ||||||||||| | Sbjct 506744 ACAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGG 506685 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || |||||||| || || || |||||||| || |||||| |||||| | Sbjct 506684 GAATACCTTCTTTGTCTTGAATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAA 506625 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || || || || || || ||||| || ||||| ||||| Sbjct 506624 CTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| |||||| || || ||||| || ||||| || || || || | Sbjct 507032 TACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 506973 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| | || || || || || || | | ||||| ||||| | Sbjct 506972 ACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGG 506913 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| ||||| || ||||| || || || ||| || | Sbjct 506912 GAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGA 506853 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || ||||| ||||| ||||| || || || ||||| Sbjct 506852 CTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| |||||| || || ||||| || ||||| || || || || | Sbjct 508782 TACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 508723 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| | ||||| ||||||||||| | | ||| |||||||| | Sbjct 508722 ACAGTGTACGACCATCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGG 508663 Query 82702 GTATTCCTTCC 82712 | || |||||| Sbjct 508662 GAATACCTTCC 508652 >seq1431 Length=173026 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||| |||| |||||| || || || ||||| || ||||| || || || ||| Sbjct 151320 CCACCACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGAT 151261 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || |||||||| ||||| |||| | ||||||||| || || Sbjct 151260 AACGTACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGA 151201 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || |||||||| || ||||||||||| || |||||| || || ||| Sbjct 151200 ATTCCCTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACT 151141 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || || || || ||||| |||||||| Sbjct 151140 TCAAGCGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094 >seq1094 Length=241507 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || |||| ||| || || || || || || || || | Sbjct 166053 TACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTG 166112 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || | |||||| ||||||||||| | | |||||||||||| | Sbjct 166113 ACAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 166172 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || || || ||||||||||| || || ||| |||| Sbjct 166173 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTA 166232 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 | ||||| || || || || || || | ||||| ||||| ||||||||| || || Sbjct 166233 CCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCATTTTTCTA 166288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981675715722238