Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 197 1e-45
seq404 113 4e-20
>seq1090
Length=275775
Score = 197 bits (218), Expect = 1e-45
Identities = 698/1069 (65%), Gaps = 35/1069 (3%)
Strand=Plus/Minus
Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997
|||||| |||| ||| | || ||| |||||||||||||| ||||| ||| | ||
Sbjct 261559 GGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATA 261500
Query 147998 GTCGTGCACCGACGACA-TGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGAC 148055
| || | || | || | || ||| || ||| |||| ||| | ||| || ||
Sbjct 261499 GAAATGTATTGAAGTCAATTTGCC-GTA-GTTGGGCTCGGCCACATGTATATTGAAGGAT 261442
Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG-CTTTATCTT 148114
|| || ||||||||||| || ||||| ||||| ||||||| |||| || | ||| |
Sbjct 261441 TGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG-GTGGTCTTGACAGA 261383
Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTG-ATATGATCGGGAATGCCGTCGATGCGCT 148173
|| ||||| |||| ||||| ||| || | || | | |||||| | |||||| |
Sbjct 261382 AATTTCCCATACCGTTTTGTAGAGCT-CTCGTATTTCTTTGGGAATTTCCTCGATGTTTT 261324
Query 148174 GCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCT 148233
| | ||||| ||| | || ||| | ||| |||||| || |||||| ||| |
Sbjct 261323 GTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTT 261264
Query 148234 CGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC 148293
|| ||| || | | || || ||||| || | | || || || | || || || |
Sbjct 261263 CGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGC 261204
Query 148294 GCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353
| ||| | ||| || ||||||| || | || |||||||||| ||| || || |
Sbjct 261203 GTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAG 261144
Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413
||| |||||||||||| || | |||||||| ||||| | ||| | || |||
Sbjct 261143 TCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTC 261084
Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTA 148471
| ||| || || ||||| |||||||| ||| | || | |||||||||||| ||
Sbjct 261083 TTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTG--GGCACCTTGTTCCACATGTCATA 261026
Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531
|| || || || ||| | ||||| || |||| || || || | |
Sbjct 261025 TTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTC 260966
Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591
|||| ||| || || || || | || || |||||||| || || ||||| ||
Sbjct 260965 AGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATT 260906
Query 148592 GA----GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647
| | || ||| |||||||||||| || ||||| | | | | ||||
Sbjct 260905 CAATTTGAAG----GCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGG 260850
Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707
||| ||||| || || | ||||||||| || ||| | | || || | || ||
Sbjct 260849 CAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCT 260790
Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG-TA 148766
|| ||||||| |||| || ||||| |||| ||||||||| |||| || || | ||
Sbjct 260789 GCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATA 260730
Query 148767 AT-TCTGC----GCAGCAATTCAAAATCGTACTT---GTCATCTACGATGCATCGGTTCA 148818
| ||| | | || |||||| || || | | || || | ||| |||||
Sbjct 260729 CTGTCTTCAATTTCTTAAAGTCAAAA--GTTTTTTCGGGCGTC-AC-AAACAT--GTTCA 260676
Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878
| || ||||| | ||||| || || | |||||||| || || || ||||| |
Sbjct 260675 GGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTT 260616
Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938
| | ||||| |||||||||||| || ||| || || | |||||| || |||| || |
Sbjct 260615 CTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTAC 260556
Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987
| | |||||| | |||||||| || |||||||| || || | |||
Sbjct 260555 AAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTC 260507
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/163 (72%), Gaps = 6/163 (4%)
Strand=Plus/Minus
Query 149616 TCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCC 149675
|| ||||| || ||||| || |||| ||| || |||||||||||||| ||||| || ||
Sbjct 259875 TCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCG 259816
Query 149676 GCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAG 149732
|| | | || ||| ||||| | | || | |||||| ||||| | ||||||
Sbjct 259815 GCAA---TCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAG 259759
Query 149733 TACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|| |||||| |||| || ||| ||| ||||||| | || ||
Sbjct 259758 TAGTTGTAGCCAAAATCACGGTCGTATACAATGGCCGAGTTGA 259716
>seq404
Length=684826
Score = 113 bits (124), Expect = 4e-20
Identities = 151/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512
||||| | ||| ||||| ||||| || ||||| ||| || ||| |||| || || |
Sbjct 507009 AAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTACGACCATCTTCCA 506952
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||||||||| ||| |||| | ||||| ||||| || || |||||||||||||| |
Sbjct 506951 ACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAA 506892
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| || | | || | ||||| | ||||| || |||| ||||| ||||||||
Sbjct 506891 TCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGC 506832
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| |||| || || ||||| || |||||
Sbjct 506831 CAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 111 bits (122), Expect = 2e-19
Identities = 151/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||| | || || ||||| || ||||||||||| || || | ||| || |||
Sbjct 506553 AAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGC 506494
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| |||| | ||||| ||||| || ||||| ||||| ||||| |||
Sbjct 506493 TGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTC-TTGAAT 506435
Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| |||| | | | |||| || || | ||||| || || | ||||| |||||| ||
Sbjct 506434 TTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACC 506375
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|||| |||||||| || || ||||||
Sbjct 506374 AGTCAATGTTTTTACAAAGATTTGCATG 506347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483348033084080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |