Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1090 197 1e-45 seq404 113 4e-20 >seq1090 Length=275775 Score = 197 bits (218), Expect = 1e-45 Identities = 698/1069 (65%), Gaps = 35/1069 (3%) Strand=Plus/Minus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTA 147997 |||||| |||| ||| | || ||| |||||||||||||| ||||| ||| | || Sbjct 261559 GGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATA 261500 Query 147998 GTCGTGCACCGACGACA-TGAGCGTGTACGTCGGGTGCGGC-ACAAACAGATTAAACGAC 148055 | || | || | || | || ||| || ||| |||| ||| | ||| || || Sbjct 261499 GAAATGTATTGAAGTCAATTTGCC-GTA-GTTGGGCTCGGCCACATGTATATTGAAGGAT 261442 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG-CTTTATCTT 148114 || || ||||||||||| || ||||| ||||| ||||||| |||| || | ||| | Sbjct 261441 TGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATG-GTGGTCTTGACAGA 261383 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTG-ATATGATCGGGAATGCCGTCGATGCGCT 148173 || ||||| |||| ||||| ||| || | || | | |||||| | |||||| | Sbjct 261382 AATTTCCCATACCGTTTTGTAGAGCT-CTCGTATTTCTTTGGGAATTTCCTCGATGTTTT 261324 Query 148174 GCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCT 148233 | | ||||| ||| | || ||| | ||| |||||| || |||||| ||| | Sbjct 261323 GTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTT 261264 Query 148234 CGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC 148293 || ||| || | | || || ||||| || | | || || || | || || || | Sbjct 261263 CGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGC 261204 Query 148294 GCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 | ||| | ||| || ||||||| || | || |||||||||| ||| || || | Sbjct 261203 GTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAG 261144 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 ||| |||||||||||| || | |||||||| ||||| | ||| | || ||| Sbjct 261143 TCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTC 261084 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTA 148471 | ||| || || ||||| |||||||| ||| | || | |||||||||||| || Sbjct 261083 TTTCCTTTAGGGCAGCCCAATCCCAGAGATCGGTG--GGCACCTTGTTCCACATGTCATA 261026 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 || || || || ||| | ||||| || |||| || || || | | Sbjct 261025 TTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTC 260966 Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 |||| ||| || || || || | || || |||||||| || || ||||| || Sbjct 260965 AGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATT 260906 Query 148592 GA----GCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 | | || ||| |||||||||||| || ||||| | | | | |||| Sbjct 260905 CAATTTGAAG----GCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGG 260850 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 ||| ||||| || || | ||||||||| || ||| | | || || | || || Sbjct 260849 CAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGATTAGATTTTCTGGCCTCCT 260790 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG-TA 148766 || ||||||| |||| || ||||| |||| ||||||||| |||| || || | || Sbjct 260789 GCAGTGGATAGTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATA 260730 Query 148767 AT-TCTGC----GCAGCAATTCAAAATCGTACTT---GTCATCTACGATGCATCGGTTCA 148818 | ||| | | || |||||| || || | | || || | ||| ||||| Sbjct 260729 CTGTCTTCAATTTCTTAAAGTCAAAA--GTTTTTTCGGGCGTC-AC-AAACAT--GTTCA 260676 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878 | || ||||| | ||||| || || | |||||||| || || || ||||| | Sbjct 260675 GGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTT 260616 Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938 | | ||||| |||||||||||| || ||| || || | |||||| || |||| || | Sbjct 260615 CTGTGCACAAATTGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTAC 260556 Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 | | |||||| | |||||||| || |||||||| || || | ||| Sbjct 260555 AAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTC 260507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 149616 TCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 || ||||| || ||||| || |||| ||| || |||||||||||||| ||||| || || Sbjct 259875 TCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCATATGTTGCGGCCGTTCG 259816 Query 149676 GCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAG 149732 || | | || ||| ||||| | | || | |||||| ||||| | |||||| Sbjct 259815 GCAA---TCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGTCTTAAATCCAAAG 259759 Query 149733 TACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 || |||||| |||| || ||| ||| ||||||| | || || Sbjct 259758 TAGTTGTAGCCAAAATCACGGTCGTATACAATGGCCGAGTTGA 259716 >seq404 Length=684826 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||| ||||| ||||| || ||||| ||| || ||| |||| || || | Sbjct 507009 AAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACA--GTGTACGACCATCTTCCA 506952 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||||| ||| |||| | ||||| ||||| || || |||||||||||||| | Sbjct 506951 ACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAA 506892 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| || | | || | ||||| | ||||| || |||| ||||| |||||||| Sbjct 506891 TCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATGGTTTTGC 506832 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || ||||| || ||||| Sbjct 506831 CAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || ||||| || ||||||||||| || || | ||| || ||| Sbjct 506553 AAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCGTCTTCAAGC 506494 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| | ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 506493 TGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTGTC-TTGAAT 506435 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | |||| || || | ||||| || || | ||||| |||||| || Sbjct 506434 TTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGATGGTTTTACC 506375 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||||| || || |||||| Sbjct 506374 AGTCAATGTTTTTACAAAGATTTGCATG 506347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483348033084080