Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1090 192 1e-43 seq305 143 6e-29 seq64 102 2e-16 seq441 100 7e-16 >seq1090 Length=275775 Score = 192 bits (212), Expect = 1e-43 Identities = 563/862 (65%), Gaps = 13/862 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||| || || ||||| ||||| | ||| || | | ||||| |||| Sbjct 259755 ACTACTTTGGATTTAAGACTCTAGAACGCTCATATCTATTGAAAATGAATGGTAAGATTG 259814 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||| || ||||| ||| | | ||||| || | |||||||||||| | || || Sbjct 259815 CCGAACGGCCGCAACATATGCTGATGCGTGTGGCCGTAGGTATTCATGGAGAGGACATAG 259874 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 | | | |||||| |||| | || | | || ||||| | || | Sbjct 259875 ATTCGGCCATTGAAACTTATAACTGGTTGTCCGAGCGTTACTTTACCCATGCATCGCCCA 259934 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATT 110540 | | ||| |||| || ||| | ||||||| ||||||| |||| ||| | || Sbjct 259935 CATTGTTTGCTGCAGCCACAAATCGTCCACAATTGTCTTCTTG-TTTCCTCTTGACCATG 259993 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | ||||||||||| || |||| | | || | | | |||| | ||||| ||| Sbjct 259994 GTTGCCGATTCTATTGAGGGCATTTTTAAGTCTGTGGAGCAGTGTGCTATGATTTCCAAA 260053 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 ||||||| ||||| || | || ||| |||||| | || ||| | || || Sbjct 260054 TCAGCTGGAGGTATTGGAATCAATGTCCATTGCATTCGCGCTAAGGGAACTTCCATAGCC 260113 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || || | || | ||| | || || ||||||||||| ||||| | |||| Sbjct 260114 GGCACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTAAGAGTATTCAATAATGTTGCA 260173 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 || || |||| |||||| || | ||| ||||||| ||||| | |||||| Sbjct 260174 CGCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCATTTGCCATCTACTTGGAACCT 260233 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA----GGATTTGAAGA 110833 |||||||| || || ||||| || || || || |||||| || || ||||| Sbjct 260234 TGGCATTCGGACATCTTTGAGTTTTTGGA--TT--TAAAAAAGAATACCGGCAAAGAAGA 260289 Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893 || | || | ||| | || ||||| | ||||| ||||||| || ||| |||||| Sbjct 260290 GCATCGTGCCAGAGATCTTTTCTATGCTCTTTGGATACCAGATTTGTTTATGCGACGTGT 260349 Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 ||||||| ||| ||||| || ||||||||||| | ||| || || ||| || Sbjct 260350 GGAAGAAAACGGCGATTGGTCCCTAATGTGTCCTCACAAATGTCCAGGACTCCATGAGGT 260409 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013 | || |||| ||||| | |||||||||||||| ||||| | ||||| | || Sbjct 260410 CTGGGGTGAAGAATTTGACAAGCTTTACGAAAAATACGAAAAGGCCGGCAAAGCTAACAG 260469 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 | ||| || || | |||||||| || | ||||| ||||| ||||||||||| Sbjct 260470 AACCATTAAGGCGCAGGCGCTTTGGTTTGCCATTATAGAATCCCAAGTAGAAACTGGAAC 260529 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 ||| || || | | ||| || | |||||||||| ||||||| ||| | || || Sbjct 260530 TCCCTACATGCTATTTAAGGACTCTTGTAATCGCAAAAGTAATCAACAAAATGTTGGCAC 260589 Query 111134 AATTAAGTCTAGTAATTTGTGC 111155 ||||| | || ||||||||| Sbjct 260590 CATTAAATGCAGCAATTTGTGC 260611 >seq305 Length=710094 Score = 143 bits (158), Expect = 6e-29 Identities = 459/701 (65%), Gaps = 22/701 (3%) Strand=Plus/Minus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 || ||||||||||| || | ||| || | |||||||| ||| ||||| ||| | || Sbjct 409068 TTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGAAACTCACA 409009 Query 131549 TTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATT 131608 ||||||| | |||| ||||| | || | || ||||| || | |||||||| Sbjct 409008 GACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCCGATGGCATA 408949 Query 131609 GTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCG 131668 |||| ||| |||||||| | || |||||| | | | |||||| | Sbjct 408948 GTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACTGAAGCCCGCTGC 408889 Query 131669 TTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATT-CATTATTGAT 131727 ||||| || || ||| | || | |||| || ||||| |||| || || Sbjct 408888 TTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGCATTCTT-AT 408830 Query 131728 TGAGAGTCTTGTTAAAAATGAAGATGA---TAAAAATAAATTATTTGATGC---TGTAAA 131781 ||| | | ||||| || || | | || || ||||| |||| || || Sbjct 408829 TGACACCTATATTAAAGATCGTGACCAACGTGAATAT---TTATTCAATGCCATTGAAAC 408773 Query 131782 TAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTC 131841 || | || || |||||| ||||| || |||||| | |||||| | ||||| Sbjct 408772 TA---TGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATATCATCGGATTC 408716 Query 131842 CGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGG 131901 ||||||||| | | | | ||||||||||| ||||||||| |||||||| ||| Sbjct 408715 TGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTCTT--CAGC 408658 Query 131902 TGCTTTCTGTGCT--ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959 || | | || || || ||| | ||||| ||||| | ||||| || | |||| Sbjct 408657 GGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTTAACATTC 408598 Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTAT 132019 ||||| | | || ||| | || |||| |||||| ||| |||||| |||| || | | Sbjct 408597 TCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATTGATGTTT 408538 Query 132020 AGAAAATTTGCTGATAAACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAG 132077 | | || || || || | | | | || ||| | | | ||||| ||||| | Sbjct 408537 A-AGTATCTGGTGCAGAAGCCCA-GCAGAGAACGTATCATTGAGATAATAAGAGAAGCGG 408480 Query 132078 TTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATG 132137 || | ||||| |||| || |||||||||| ||||| |||||||||||||| |||||| Sbjct 408479 TTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATTGGTATGAATT 408420 Query 132138 CTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGT 132178 ||| | ||| ||||| |||||||| || || |||||| Sbjct 408419 GTGATTTAATGTCCGAGTATATTGAATTTGTAGCAGATCGT 408379 >seq64 Length=1447756 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| || |||| |||||| |||| | |||||| | || || | || || |||||| | Sbjct 277138 CATCTGCGTGACGATGATTTGGTTATTTTCAATCGCCAGCCCACTCTACACAAAATGAGT 277079 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| |||| ||| ||||| || | | | || ||||| | || | || || Sbjct 277078 ATGATGGGTCATCGAGTTAAAGTTTTGCCATGGTCAACGTTTCGTATGAACTT--GT-CT 277022 Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || || ||||| |||||||||||||| |||||||| |||||||||| ||| Sbjct 277021 TGTACTTCCCCATACAATGCTGATTTTGATGGAGACGAAATGAACTTGCATGTACCGCAA 276962 Query 305486 TCAAAGGTTACAA 305498 || | || |||| Sbjct 276961 TCTATGGAAACAA 276949 >seq441 Length=566551 Score = 100 bits (110), Expect = 7e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || || ||| | ||||| || ||||||||||||| || ||| |||| ||| ||| Sbjct 390868 GTGCTCTTTAATCGCCAACCTTCCTTGCATAAAATGTCCATTATGTGTCATCAAGCCAAG 390809 Query 305390 GTATTATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 ||| | | | || |||| |||| |||| |||| ||||| || |||||||| || Sbjct 390808 GTAC-AGCCACAAAGAACTTTCAGATTCAATGAGTGTGCCTGTACACCCTATAATGCTGA 390750 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||| |||||||||||| | ||| |||| ||| Sbjct 390749 TTTTGATGGTGATGAAATGAATTTACATTTACCCCAA 390713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186629688878362