Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 192 1e-43
seq305 143 6e-29
seq64 102 2e-16
seq441 100 7e-16
>seq1090
Length=275775
Score = 192 bits (212), Expect = 1e-43
Identities = 563/862 (65%), Gaps = 13/862 (2%)
Strand=Plus/Plus
Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361
|||| ||||| || || ||||| ||||| | ||| || | | ||||| ||||
Sbjct 259755 ACTACTTTGGATTTAAGACTCTAGAACGCTCATATCTATTGAAAATGAATGGTAAGATTG 259814
Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421
||||| || ||||| ||| | | ||||| || | |||||||||||| | || ||
Sbjct 259815 CCGAACGGCCGCAACATATGCTGATGCGTGTGGCCGTAGGTATTCATGGAGAGGACATAG 259874
Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481
| | | |||||| |||| | || | | || ||||| | || |
Sbjct 259875 ATTCGGCCATTGAAACTTATAACTGGTTGTCCGAGCGTTACTTTACCCATGCATCGCCCA 259934
Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATT 110540
| | ||| |||| || ||| | ||||||| ||||||| |||| ||| | ||
Sbjct 259935 CATTGTTTGCTGCAGCCACAAATCGTCCACAATTGTCTTCTTG-TTTCCTCTTGACCATG 259993
Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600
| ||||||||||| || |||| | | || | | | |||| | ||||| |||
Sbjct 259994 GTTGCCGATTCTATTGAGGGCATTTTTAAGTCTGTGGAGCAGTGTGCTATGATTTCCAAA 260053
Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660
||||||| ||||| || | || ||| |||||| | || ||| | || ||
Sbjct 260054 TCAGCTGGAGGTATTGGAATCAATGTCCATTGCATTCGCGCTAAGGGAACTTCCATAGCC 260113
Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720
| || || | || | ||| | || || ||||||||||| ||||| | ||||
Sbjct 260114 GGCACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTAAGAGTATTCAATAATGTTGCA 260173
Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777
|| || |||| |||||| || | ||| ||||||| ||||| | ||||||
Sbjct 260174 CGCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCATTTGCCATCTACTTGGAACCT 260233
Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA----GGATTTGAAGA 110833
|||||||| || || ||||| || || || || |||||| || || |||||
Sbjct 260234 TGGCATTCGGACATCTTTGAGTTTTTGGA--TT--TAAAAAAGAATACCGGCAAAGAAGA 260289
Query 110834 ACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGT 110893
|| | || | ||| | || ||||| | ||||| ||||||| || ||| ||||||
Sbjct 260290 GCATCGTGCCAGAGATCTTTTCTATGCTCTTTGGATACCAGATTTGTTTATGCGACGTGT 260349
Query 110894 TCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953
||||||| ||| ||||| || ||||||||||| | ||| || || ||| ||
Sbjct 260350 GGAAGAAAACGGCGATTGGTCCCTAATGTGTCCTCACAAATGTCCAGGACTCCATGAGGT 260409
Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013
| || |||| ||||| | |||||||||||||| ||||| | ||||| | ||
Sbjct 260410 CTGGGGTGAAGAATTTGACAAGCTTTACGAAAAATACGAAAAGGCCGGCAAAGCTAACAG 260469
Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073
| ||| || || | |||||||| || | ||||| ||||| |||||||||||
Sbjct 260470 AACCATTAAGGCGCAGGCGCTTTGGTTTGCCATTATAGAATCCCAAGTAGAAACTGGAAC 260529
Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133
||| || || | | ||| || | |||||||||| ||||||| ||| | || ||
Sbjct 260530 TCCCTACATGCTATTTAAGGACTCTTGTAATCGCAAAAGTAATCAACAAAATGTTGGCAC 260589
Query 111134 AATTAAGTCTAGTAATTTGTGC 111155
||||| | || |||||||||
Sbjct 260590 CATTAAATGCAGCAATTTGTGC 260611
>seq305
Length=710094
Score = 143 bits (158), Expect = 6e-29
Identities = 459/701 (65%), Gaps = 22/701 (3%)
Strand=Plus/Minus
Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548
|| ||||||||||| || | ||| || | |||||||| ||| ||||| ||| | ||
Sbjct 409068 TTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGAAACTCACA 409009
Query 131549 TTGAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATT 131608
||||||| | |||| ||||| | || | || ||||| || | ||||||||
Sbjct 409008 GACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCCGATGGCATA 408949
Query 131609 GTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCG 131668
|||| ||| |||||||| | || |||||| | | | |||||| |
Sbjct 408948 GTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACTGAAGCCCGCTGC 408889
Query 131669 TTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATT-CATTATTGAT 131727
||||| || || ||| | || | |||| || ||||| |||| || ||
Sbjct 408888 TTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGCATTCTT-AT 408830
Query 131728 TGAGAGTCTTGTTAAAAATGAAGATGA---TAAAAATAAATTATTTGATGC---TGTAAA 131781
||| | | ||||| || || | | || || ||||| |||| || ||
Sbjct 408829 TGACACCTATATTAAAGATCGTGACCAACGTGAATAT---TTATTCAATGCCATTGAAAC 408773
Query 131782 TAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTC 131841
|| | || || |||||| ||||| || |||||| | |||||| | |||||
Sbjct 408772 TA---TGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATATCATCGGATTC 408716
Query 131842 CGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGG 131901
||||||||| | | | | ||||||||||| ||||||||| |||||||| |||
Sbjct 408715 TGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATTCTT--CAGC 408658
Query 131902 TGCTTTCTGTGCT--ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959
|| | | || || || ||| | ||||| ||||| | ||||| || | ||||
Sbjct 408657 GGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTTAACATTC 408598
Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTAT 132019
||||| | | || ||| | || |||| |||||| ||| |||||| |||| || | |
Sbjct 408597 TCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATTGATGTTT 408538
Query 132020 AGAAAATTTGCTGATAAACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAG 132077
| | || || || || | | | | || ||| | | | ||||| ||||| |
Sbjct 408537 A-AGTATCTGGTGCAGAAGCCCA-GCAGAGAACGTATCATTGAGATAATAAGAGAAGCGG 408480
Query 132078 TTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATG 132137
|| | ||||| |||| || |||||||||| ||||| |||||||||||||| ||||||
Sbjct 408479 TTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATTGGTATGAATT 408420
Query 132138 CTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGT 132178
||| | ||| ||||| |||||||| || || ||||||
Sbjct 408419 GTGATTTAATGTCCGAGTATATTGAATTTGTAGCAGATCGT 408379
>seq64
Length=1447756
Score = 102 bits (112), Expect = 2e-16
Identities = 140/193 (73%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||| || |||| |||||| |||| | |||||| | || || | || || |||||| |
Sbjct 277138 CATCTGCGTGACGATGATTTGGTTATTTTCAATCGCCAGCCCACTCTACACAAAATGAGT 277079
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
||||||| |||| ||| ||||| || | | | || ||||| | || | || ||
Sbjct 277078 ATGATGGGTCATCGAGTTAAAGTTTTGCCATGGTCAACGTTTCGTATGAACTT--GT-CT 277022
Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
||||| || || ||||| |||||||||||||| |||||||| |||||||||| |||
Sbjct 277021 TGTACTTCCCCATACAATGCTGATTTTGATGGAGACGAAATGAACTTGCATGTACCGCAA 276962
Query 305486 TCAAAGGTTACAA 305498
|| | || ||||
Sbjct 276961 TCTATGGAAACAA 276949
>seq441
Length=566551
Score = 100 bits (110), Expect = 7e-16
Identities = 118/157 (75%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || || ||| | ||||| || ||||||||||||| || ||| |||| ||| |||
Sbjct 390868 GTGCTCTTTAATCGCCAACCTTCCTTGCATAAAATGTCCATTATGTGTCATCAAGCCAAG 390809
Query 305390 GTATTATCTGGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448
||| | | | || |||| |||| |||| |||| ||||| || |||||||| ||
Sbjct 390808 GTAC-AGCCACAAAGAACTTTCAGATTCAATGAGTGTGCCTGTACACCCTATAATGCTGA 390750
Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485
||||||||| |||||||||||| | ||| |||| |||
Sbjct 390749 TTTTGATGGTGATGAAATGAATTTACATTTACCCCAA 390713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186629688878362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |