Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq404 131 1e-25
seq1094 118 7e-22
>seq404
Length=684826
Score = 131 bits (144), Expect = 1e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||||| ||||||||||| || |||||||| ||||| || |||||
Sbjct 506803 ACCACCACGTAGACGTAGGACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGA 506744
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||| ||| |||| |||||||| || || || |||||||||||||| |||||| | ||
Sbjct 506743 CAATGTACGTCCGTCTTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGG 506684
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| |||||| | | ||||| || | || || | ||| |
Sbjct 506683 AATACCTTCTTTGTCTTGAATTTT-GGCCTTAACATTTTCTATAGTATCAGAAGGTTCAA 506625
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| ||||| || ||||| || || || || || |||||
Sbjct 506624 CTTCCAGTGTGATAGTTTTTCCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 107 bits (118), Expect = 1e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594
|| || |||||||| | || |||||||| || |||||||| || | ||| || ||
Sbjct 506562 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTCGCCCG 506503
Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654
|| || | || || || || |||||||| ||||| || ||| | || | |||||||||
Sbjct 506502 TCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTCTTTG 506443
Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713
|| |||||| | || ||||| || | ||| || | || || || | |||||
Sbjct 506442 TCTTGAATTTT-GGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGTGAT 506384
Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||||||| || || |||||||||||||| |||||
Sbjct 506383 GGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| || || ||||| || || ||| || || |||||||| |||||
Sbjct 507031 ACCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 506972
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||| || | || ||||| || || ||||| |||||||||||||| || ||| | ||
Sbjct 506971 CAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGG 506912
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| ||||| ||| || |||| || | || | |||||| | || |
Sbjct 506911 AATGCCTTCCTTGTCTTGAATCTTGGCTTTC-ACGTTTTCGATGGTGTCCGAAGGCTCGA 506853
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || || || || || ||||| ||||||
Sbjct 506852 CTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | |||||||| || || || ||||| || || ||||||||
Sbjct 506346 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGAC 506287
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || ||| | || |||| ||||| |||||||| |||||||| || |||||| | ||
Sbjct 506286 AAGGTACGTCCATCTTCCAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 506227
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| |||||||| || ||| || ||| ||||| ||| ||| || | ||| ||
Sbjct 506226 ATGCCTTCTTTATCTTGAATCTTGGCTTT-AACATTTTCAATGGTATCAGAGGGTTCAAC 506168
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|| | ||||| || || || ||||| || || || ||||||||||||
Sbjct 506167 CTCCAATGTGATGGTCTTGCCAGTTAATGTCTTCACGAAGATCTGCATA 506119
>seq1094
Length=241507
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||||| | ||| ||| ||||| |||||||| || ||
Sbjct 166054 ACCACCACGAAGACGGAGTACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGA 166113
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || ||||||||||| || ||||| |||||||| || |||||| | ||
Sbjct 166114 CAAGGTGCGACCATCCTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 166173
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||||||||| ||||| | | |||| || | |||||| | || |
Sbjct 166174 GATACCTTCTTTGTCTTGGATTTT-AGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTA 166232
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | || || |||||||| |||| || || ||||||||||||||
Sbjct 166233 CCTCCAAGGTAATGGTTTTACCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328655758784640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |