Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq404 132 1e-25 >seq404 Length=684826 Score = 132 bits (146), Expect = 1e-25 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || ||||||||||| ||||| || ||||| ||| || || || ||||| Sbjct 509024 CAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCCGATACTATCGAAAA 509083 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| |||||||| ||| || ||| ||| | | |||| Sbjct 509084 TGTGAAAGCTAAA-ATTCAAGATAAAGAAGGCATTCCCCCAGACCAACAACGCTTAATCT 509142 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 ||||||| ||||| ||||||||||| | |||||| | || |||||| |||||||||| | Sbjct 509143 TCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAACATCCAGAAAGAAT 509202 Query 206363 CTACTCTTCA 206372 |||| || || Sbjct 509203 CTACCCTCCA 509212 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| ||||| | ||||| || ||| ||||| ||||| || ||||| Sbjct 506828 ACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCGGACACCATCGAAAACGTGAAAGCC 506887 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| || ||||| ||| || ||| || | | || |||||||| || Sbjct 506888 AA-GATTCAAGACAAGGAAGGCATTCCCCCAGACCAACAGCGTTTGATTTTCGCCGGCAA 506946 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||||||||||||||| | || || |||| |||||| ||||||| |||||||| || || Sbjct 506947 GCAGTTGGAAGATGGTCGTACACTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCA 507006 Query 206373 CCTTGTTTTGAGACTTCG 206390 | |||||| | || || Sbjct 507007 TTTAGTTTTGCGTCTCCG 507024 Score = 104 bits (114), Expect = 6e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || |||||||| |||||||| ||||| ||| || || || | ||| Sbjct 508796 CAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCCGATACCATTGAAAA 508855 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||||||||| || ||||| ||| || || ||| | | |||| Sbjct 508856 CGTCAAAGCTAA-GATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATCT 508914 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || |||||||||||||| | || ||| | ||||| || |||||||||| | Sbjct 508915 TCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAATATCCAGAAAGAAT 508974 Query 206363 CTACTCTTCAC 206373 | || || ||| Sbjct 508975 CGACCCTCCAC 508985 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || || || |||||||||||| ||||| || | ||| || ||| Sbjct 509262 ACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCTGATACCATAGAAAATGTCAAGGCC 509321 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| |||||||| ||| || || ||| | | ||||| ||||| || Sbjct 509322 AAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCCGGCAAA 509381 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||||||||| | || ||| | || |||||| ||||||| || || || || || Sbjct 509382 CAGTTGGAAGATGGTCGCACATTGTCGGACTACAACATCCAGAAGGAATCAACACTCCA 509440 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || ||||| ||||| || ||| ||||| || | ||| || ||||| Sbjct 506144 ACTGGCAAGACCATCACATTGGAGGTTGAACCCTCTGATACCATTGAAAATGTTAAAGCC 506203 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| |||||||| ||| || || ||| | | ||||| ||||| || Sbjct 506204 AA-GATTCAAGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGTAA 506262 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||||||| | || ||| ||||||| || |||| || || ||||| ||||| Sbjct 506263 ACAGCTGGAAGATGGACGTACCTTGTCCGATTATAATATCCAAAAGGAATCTACACTTCA 506322 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| ||||| || || |||||| || | ||| Sbjct 506363 AAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCTGATACCATTGAAAAT 506422 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| ||||||||||| || ||| || || | || || Sbjct 506423 GTTAAAGCCAAA-ATTCAAGACAAAGAAGGAATCCCACCAGACCAACAGCGATTGATTTT 506481 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | ||||| || | || ||| | |||||||| | || ||||| || Sbjct 506482 CGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAATATTCAAAAAGAATC 506541 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | || ||| | ||||| Sbjct 506542 TACATTGCATTTGGTATTGCGCCTTCG 506568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181638459084682