Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 244 1e-59
seq1431 122 8e-23
seq404 116 4e-21
seq1094 98.7 9e-16
>seq1090
Length=275775
Score = 244 bits (270), Expect = 1e-59
Identities = 912/1401 (65%), Gaps = 49/1401 (3%)
Strand=Plus/Minus
Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608
|||||||||||||| | | || || ||||| || | |||||||||||||||||| |
Sbjct 261581 CAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCT 261522
Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668
| |||||| | ||| || | || || ||||||| || |||| | ||||| |
Sbjct 261521 TAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGG 261462
Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728
|||| | ||| || ||||| ||||| || |||||||| || || || ||||| |
Sbjct 261461 CCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTT 261402
Query 146729 CAATCATGCGTTTTGTCTTCA-TTTCCCAAGCGGTTTTGTACAGCCC-CTTAACGCTATC 146786
||| || || ||| | | ||||||| | |||||||| ||| | | || || |
Sbjct 261401 TAATGGTG-GTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTG 261343
Query 146787 TGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTC 146846
||||| | || |||||||| || ||||| | | || ||| | ||| |||||
Sbjct 261342 -GGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTC 261284
Query 146847 GGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAA 146906
| |||| |||| | | || | || |||| |||||||| | | ||
Sbjct 261283 CTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAA 261224
Query 146907 CTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATT 146966
|| |||| || ||||| | ||| | || |||| | || || |||| |||||
Sbjct 261223 TTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATT 261164
Query 146967 ATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCG 147026
||||| | |||||||| || | || || |||||| |||| | || ||||| ||
Sbjct 261163 GTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCG 261104
Query 147027 CAGACCGTACGCACGG--ATGTTGTCCTTCAAAGTTTGCCAGTCCCACA--TCGACGAGG 147082
| ||| | | || || | ||||| | | ||| ||||| | ||| | ||
Sbjct 261103 TACACCAT--GTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCG--GTGG 261048
Query 147083 GCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACG 147142
|| | |||||||||||| || || || | ||| || | || || || | |||
Sbjct 261047 GCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACG 260988
Query 147143 TAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATA 147202
| ||| || || | | ||||||||||| ||||| || | || |||||||| |
Sbjct 260987 TTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAA 260928
Query 147203 TGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCA 147262
| ||||| ||||||| || | | || || ||||| ||||| || |||||
Sbjct 260927 TAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCA 260868
Query 147263 GAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTT----T 147318
|| | | | |||||| |||||||||| ||| | ||| || || ||||| | |
Sbjct 260867 TGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGAT 260808
Query 147319 TCG--TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGA 147376
| | || ||| || || || | ||||||| |||| ||| || || |||||||
Sbjct 260807 TAGATTTTCTG-GCCTCCTGC-----AGTGGATAGTAGTTGACATCTATGATTTTGTTGA 260754
Query 147377 GGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTT 147436
| || ||| | || ||||||| || ||| || | ||||| || ||| |||| ||
Sbjct 260753 GATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGG 260694
Query 147437 -CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCG 147495
|| ||| || || ||||| | || || |||| |||||||| || | || ||
Sbjct 260693 GCGTCACAAAC--AT--GTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCC 260638
Query 147496 GCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAAT 147553
| || |||| || | |||||||| | ||||| ||||||||||| ||| || | ||
Sbjct 260637 G-GT-GCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACAT 260580
Query 147554 TTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCT 147613
|||| ||||| ||||| ||||| || | ||| || || |||||||| || || || |
Sbjct 260579 TTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTT 260520
Query 147614 CGACTTGCGTTTC---AACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT 147670
| ||||| | ||| || | ||||| | || ||||||| | | | | | | |
Sbjct 260519 CTACTTGGGATTCTATAATGGCAAACCAA---AGCGCCTGCGC-CTTA-ATGGTTCTGTT 260465
Query 147671 AGC--GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATC 147728
||| ||| | |||||||| ||||| | | ||||| || || || || ||
Sbjct 260464 AGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTC 260405
Query 147729 GGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCG 147788
|| || ||||| | || |||||||| || ||||| | ||| | | || ||
Sbjct 260404 ATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACG 260345
Query 147789 TCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCAATCC 147846
||||||||||| ||| || | ||| || || || | |||||| | || | ||| ||
Sbjct 260344 TCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGC--TCT 260287
Query 147847 TCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTC 147905
|| ||| | || ||| |||| || || | | ||||||| | ||||| |||||
Sbjct 260286 TCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTC-AAAGATGTCCGAATGCCAAGGTTC 260228
Query 147906 AATGTAGACGGCCAGCGCACC 147926
| ||||| ||| | |||||
Sbjct 260227 CAAGTAGATGGCAAATGCACC 260207
>seq1431
Length=173026
Score = 122 bits (134), Expect = 8e-23
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
|||||| |||||||| ||||| | |||| || ||||| ||||||||||| | ||
Sbjct 151315 ACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGT 151256
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| |||||| |||||||| |||| | | |||| ||| |||||||| || || || ||
Sbjct 151255 ACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCC 151196
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||||| || ||| || || | | ||| | ||||| | |||||| ||||| |
Sbjct 151195 CTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAG 151136
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| | || || || || | |||||| | |||||||||||
Sbjct 151135 CGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094
>seq404
Length=684826
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | |||| || || || ||||||||||| || || || ||||||
Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTCC 509387
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| |||||| |||| | |||| | ||| || |||||||| || |||||||||||||| |
Sbjct 509386 AACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTGA 509327
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| || | | ||| | ||||| | || |||||||| | ||| | || ||
Sbjct 509326 ATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTTT 509267
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||| ||| || | |||||| |||||
Sbjct 509266 CCAGTCAAAGTCTTGACGAAAATTTGCAT 509238
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||||||||| | | || || ||||| || || || ||| || |||||| ||||||
Sbjct 506329 AACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTC 506270
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
||||||||||||| | |||| | ||| |||||||||||||| ||||||||||||||
Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||| || ||| | | ||| | ||||| | || || || || | || | || ||
Sbjct 506209 AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTT 506150
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| | || || | ||| ||||||||
Sbjct 506149 GCCAGTTAATGTCTTCACGAAGATCTGCAT 506120
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||||||| ||||| | | | ||||| || || |||||||||||| || ||||| |
Sbjct 507018 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCA 506959
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| | ||| || |||| | || | ||||||||| ||||| || |||||||| ||
Sbjct 506958 TCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 506899
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| || ||||| | ||| | || || | ||||| ||||||| || |
Sbjct 506898 TCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATG 506839
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| ||||||| || || | ||| || |||||
Sbjct 506838 GTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|| ||||| | | | || ||||| || ||||||||||| || || || ||||||
Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| || || |||| |||||| || ||||| ||||| || |||||||||||||| |
Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| ||||| | ||| | |||||||| || || ||||| | || | |||||
Sbjct 509098 ATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTT 509039
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| ||||| || || | ||| || ||||||
Sbjct 509038 CCTGTCAGGGTCTTGACGAAGATTTGCATG 509009
Score = 105 bits (116), Expect = 6e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | |||||| |||||||| | | || ||||||||||| ||||| || || ||
Sbjct 506569 ACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGT 506510
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||||| ||||| || || | | || | |||||||| ||||| || || ||
Sbjct 506509 TCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCC 506450
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || |||||| ||| | | ||| | ||||| | ||||| || || |
Sbjct 506449 TTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAA 506390
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | ||||||||||||| ||||||| || || ||||||
Sbjct 506389 GGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||||| | || |||||||||||||| |||||| || ||||| |||||
Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| || || || | | || | ||||||||||||||| || || |||||||| || |
Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| || | | ||| | |||||| | || || ||||| | || | |||||
Sbjct 506664 ATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTT 506605
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| || | || || | ||| || ||||||
Sbjct 506604 CCCGTTAATGTCTTAACGAATATTTGCATG 506575
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||||||| ||||| | | | ||||| || || |||||||||||| || ||||| |
Sbjct 508768 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCA 508709
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
||||| | ||||||||| | | |||| | ||| || |||||||| || || |||||
Sbjct 508708 TCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTC 508653
>seq1094
Length=241507
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974
|||||||| | | ||||| ||||||||||||||||| || ||| || ||| ||
Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132
Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034
| ||||| || | | |||| | ||| ||||||||||| || || |||||||| ||
Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192
Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094
||||| || | | ||| | ||| |||| ||||| || || | || | ||||||
Sbjct 166193 ATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTA 166252
Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || || || | || ||||||||
Sbjct 166253 CCGGTTAGGGTCTTGACAAAGATCTGCAT 166281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476539458099120
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