Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1090 244 1e-59 seq1431 122 8e-23 seq404 116 4e-21 seq1094 98.7 9e-16 >seq1090 Length=275775 Score = 244 bits (270), Expect = 1e-59 Identities = 912/1401 (65%), Gaps = 49/1401 (3%) Strand=Plus/Minus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 |||||||||||||| | | || || ||||| || | |||||||||||||||||| | Sbjct 261581 CAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCT 261522 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 | |||||| | ||| || | || || ||||||| || |||| | ||||| | Sbjct 261521 TAAGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGG 261462 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 |||| | ||| || ||||| ||||| || |||||||| || || || ||||| | Sbjct 261461 CCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCATTT 261402 Query 146729 CAATCATGCGTTTTGTCTTCA-TTTCCCAAGCGGTTTTGTACAGCCC-CTTAACGCTATC 146786 ||| || || ||| | | ||||||| | |||||||| ||| | | || || | Sbjct 261401 TAATGGTG-GTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTG 261343 Query 146787 TGGAATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTC 146846 ||||| | || |||||||| || ||||| | | || ||| | ||| ||||| Sbjct 261342 -GGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTC 261284 Query 146847 GGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAA 146906 | |||| |||| | | || | || |||| |||||||| | | || Sbjct 261283 CTCATCCCATAGGTCGAGTTCGGTCAAATCTTTAAGCAAATGATGATTGACAATGTTGAA 261224 Query 146907 CTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATT 146966 || |||| || ||||| | ||| | || |||| | || || |||| ||||| Sbjct 261223 TTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTCGAAAGCTTCATT 261164 Query 146967 ATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCG 147026 ||||| | |||||||| || | || || |||||| |||| | || ||||| || Sbjct 261163 GTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAGCGAATTGCG 261104 Query 147027 CAGACCGTACGCACGG--ATGTTGTCCTTCAAAGTTTGCCAGTCCCACA--TCGACGAGG 147082 | ||| | | || || | ||||| | | ||| ||||| | ||| | || Sbjct 261103 TACACCAT--GTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATCG--GTGG 261048 Query 147083 GCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACG 147142 || | |||||||||||| || || || | ||| || | || || || | ||| Sbjct 261047 GCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCCTGGATACG 260988 Query 147143 TAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATA 147202 | ||| || || | | ||||||||||| ||||| || | || |||||||| | Sbjct 260987 TTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGCACCATAGTAAA 260928 Query 147203 TGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCA 147262 | ||||| ||||||| || | | || || ||||| ||||| || ||||| Sbjct 260927 TAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTAGGGATAACGCA 260868 Query 147263 GAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTT----T 147318 || | | | |||||| |||||||||| ||| | ||| || || ||||| | | Sbjct 260867 TGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGACGATGTCTGAGAT 260808 Query 147319 TCG--TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGA 147376 | | || ||| || || || | ||||||| |||| ||| || || ||||||| Sbjct 260807 TAGATTTTCTG-GCCTCCTGC-----AGTGGATAGTAGTTGACATCTATGATTTTGTTGA 260754 Query 147377 GGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTT 147436 | || ||| | || ||||||| || ||| || | ||||| || ||| |||| || Sbjct 260753 GATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTTTTTTCGG 260694 Query 147437 -CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCG 147495 || ||| || || ||||| | || || |||| |||||||| || | || || Sbjct 260693 GCGTCACAAAC--AT--GTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATTTCATCC 260638 Query 147496 GCGTCGCTG--TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAAT 147553 | || |||| || | |||||||| | ||||| ||||||||||| ||| || | || Sbjct 260637 G-GT-GCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCAACAT 260580 Query 147554 TTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCT 147613 |||| ||||| ||||| ||||| || | ||| || || |||||||| || || || | Sbjct 260579 TTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCCAGTTT 260520 Query 147614 CGACTTGCGTTTC---AACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGAT 147670 | ||||| | ||| || | ||||| | || ||||||| | | | | | | | Sbjct 260519 CTACTTGGGATTCTATAATGGCAAACCAA---AGCGCCTGCGC-CTTA-ATGGTTCTGTT 260465 Query 147671 AGC--GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATC 147728 ||| ||| | |||||||| ||||| | | ||||| || || || || || Sbjct 260464 AGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCAGACCTC 260405 Query 147729 GGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCG 147788 || || ||||| | || |||||||| || ||||| | ||| | | || || Sbjct 260404 ATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCACACG 260345 Query 147789 TCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCAATCC 147846 ||||||||||| ||| || | ||| || || || | |||||| | || | ||| || Sbjct 260344 TCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGC--TCT 260287 Query 147847 TCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTC 147905 || ||| | || ||| |||| || || | | ||||||| | ||||| ||||| Sbjct 260286 TCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTC-AAAGATGTCCGAATGCCAAGGTTC 260228 Query 147906 AATGTAGACGGCCAGCGCACC 147926 | ||||| ||| | ||||| Sbjct 260227 CAAGTAGATGGCAAATGCACC 260207 >seq1431 Length=173026 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| |||||||| ||||| | |||| || ||||| ||||||||||| | || Sbjct 151315 ACGCAATCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACGT 151256 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| |||||||| |||| | | |||| ||| |||||||| || || || || Sbjct 151255 ACGACCATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCC 151196 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || ||| || || | | ||| | ||||| | |||||| ||||| | Sbjct 151195 CTCTTTGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAG 151136 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || || | |||||| | ||||||||||| Sbjct 151135 CGTAATGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCAT 151094 >seq404 Length=684826 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||| || || || ||||||||||| || || || |||||| Sbjct 509446 ACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGACAATGTGCGACCATCTTCC 509387 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||| |||| | |||| | ||| || |||||||| || |||||||||||||| | Sbjct 509386 AACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTATCTTGA 509327 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||||| | || |||||||| | ||| | || || Sbjct 509326 ATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCACTTCCAACGTAATTGTCTTT 509267 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||| || | |||||| ||||| Sbjct 509266 CCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | || || ||||| || || || ||| || |||||| |||||| Sbjct 506329 AACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTC 506270 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||||| | |||| | ||| |||||||||||||| |||||||||||||| Sbjct 506269 CAGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTG 506210 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||| | | ||| | ||||| | || || || || | || | || || Sbjct 506209 AATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTT 506150 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | || || | ||| |||||||| Sbjct 506149 GCCAGTTAATGTCTTCACGAAGATCTGCAT 506120 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| ||||| | | | ||||| || || |||||||||||| || ||||| | Sbjct 507018 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCA 506959 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| || |||| | || | ||||||||| ||||| || |||||||| || Sbjct 506958 TCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 506899 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | ||| | || || | ||||| ||||||| || | Sbjct 506898 TCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATG 506839 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| || || | ||| || ||||| Sbjct 506838 GTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 || ||||| | | | || ||||| || ||||||||||| || || || |||||| Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || |||| |||||| || ||||| ||||| || |||||||||||||| | Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | ||| | |||||||| || || ||||| | || | ||||| Sbjct 509098 ATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTT 509039 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || ||||| || || | ||| || |||||| Sbjct 509038 CCTGTCAGGGTCTTGACGAAGATTTGCATG 509009 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||| |||||||| | | || ||||||||||| ||||| || || || Sbjct 506569 ACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGT 506510 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||| || || | | || | |||||||| ||||| || || || Sbjct 506509 TCGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCC 506450 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||| | | ||| | ||||| | ||||| || || | Sbjct 506449 TTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAA 506390 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||||||||||| ||||||| || || |||||| Sbjct 506389 GGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCATG 506347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||||| | || |||||||||||||| |||||| || ||||| ||||| Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || || | | || | ||||||||||||||| || || |||||||| || | Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | |||||| | || || ||||| | || | ||||| Sbjct 506664 ATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTT 506605 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || | || || | ||| || |||||| Sbjct 506604 CCCGTTAATGTCTTAACGAATATTTGCATG 506575 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| ||||| | | | ||||| || || |||||||||||| || ||||| | Sbjct 508768 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCA 508709 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| | ||||||||| | | |||| | ||| || |||||||| || || ||||| Sbjct 508708 TCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATACCTTC 508653 >seq1094 Length=241507 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| ||||||||||||||||| || ||| || ||| || Sbjct 166073 ACCAAATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTGCGACCATCCTCC 166132 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| || | | |||| | ||| ||||||||||| || || |||||||| || Sbjct 166133 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGG 166192 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| |||| ||||| || || | || | |||||| Sbjct 166193 ATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTA 166252 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | || |||||||| Sbjct 166253 CCGGTTAGGGTCTTGACAAAGATCTGCAT 166281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476539458099120