Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1090 145 7e-30 seq404 107 2e-18 >seq1090 Length=275775 Score = 145 bits (160), Expect = 7e-30 Identities = 891/1401 (64%), Gaps = 68/1401 (5%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || |||||||| || | ||| || || ||||||||||||| ||| |||||||||||||| Sbjct 261579 ACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTA 261520 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | || | ||||||||| |||||| || | ||| | ||| | || |||||| Sbjct 261519 AGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCC 261460 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || | ||| | ||||| || || || ||| ||| ||| || || || ||||| || Sbjct 261459 ACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT-TTT 261401 Query 136819 AATAGTACTTTTTGC-TTAATTTCCCAAGCGGTTTTAAAGAGCTC---CTTGACATTGGG 136874 ||| || | || | ||||||||| | ||||| ||||||| | | ||| Sbjct 261400 AATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTG-- 261343 Query 136875 CGGAATTTCATCGATATTCTGTACAGATCCGTTGTT--------TTTGATGAT---TTTC 136923 |||||||| ||||| || |||| || || | | ||| || | |||| Sbjct 261342 -GGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTC 261284 Query 136924 ATCATGAGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTT 136983 |||| || ||||||| | | || | |||| | | ||| ||||| Sbjct 261283 CTCATCCCATAGGTCGAGT-----TCGGTC---AAATCTTTA---AGCAAATGATGATTG 261235 Query 136984 ACTA-CTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTC 137042 || | |||| |||| |||||||| || | |||| || | || |||| |||| || Sbjct 261234 ACAATGTTGA-ATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTC 261176 Query 137043 GAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAA 137102 ||| | ||| ||||| |||| ||| || ||||||| || || |||||| || | | Sbjct 261175 GAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAG 261116 Query 137103 CAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAG 137162 || ||||| |||| ||| ||| ||| | | || ||| || | ||| | ||| || Sbjct 261115 CAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAG 261056 Query 137163 ATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACT 137222 || | | | | | ||||||| ||| | || | | || || | || || Sbjct 261055 ATCGGTGG---GCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT 260999 Query 137223 TTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGC 137282 | ||| ||| | ||||| | || | ||| |||| |||| ||| | | || Sbjct 260998 TCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGC 260939 Query 137283 GCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTA 137342 ||||||||||||||||| | |||| | |||||||| || || | ||| ||||| Sbjct 260938 ACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTA 260879 Query 137343 GGGCATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTC 137401 ||| ||| | || | | | || ||| |||| || || | ||| || || || || | Sbjct 260878 GGG-ATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGAC 260820 Query 137402 TGTGTTTAAAATTTGATATT-TGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATT 137460 ||| | | ||| ||| || || | | | || ||||| |||| | ||||| ||| Sbjct 260819 GATGTCTGAGATTAGATTTTCTGGCCTCCTGC-AGTGGATAGTAGTTGACATCTATGATT 260761 Query 137461 CTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTC--GAAATCGAAGC 137518 | ||||||||| | |||||| | || ||| | | | | ||| || || || Sbjct 260760 TTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCA--ATTTCTTAAAGTCAAAAG 260703 Query 137519 TTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCG 137578 |||| | || | |||| | || | | ||| ||||| |||||||| || || Sbjct 260702 TTTT--TTCGGGCGTCA-CAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGA 260646 Query 137579 TTTCTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCAC 137636 |||| | || |||| |||| || ||||| | ||| | ||||||| | || Sbjct 260645 TTTC-ATCCGGT-GCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGT 260588 Query 137637 TCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGA-TCTTTATATATCATATACGGAG 137695 || | ||| | |||||| |||| || | || || || ||| ||| ||| || |||| Sbjct 260587 GCCAACATTTTGTTGATTACTTTT-GCGATTACAAGAGTCCTTAAATAGCATGTAGGGAG 260529 Query 137696 TTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTT 137755 |||| ||||| ||||| | || | ||| ||| || |||| ||| | ||| Sbjct 260528 TTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCGCCTTAA-TGGTT 260470 Query 137756 CTCTAAACTT-----GCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCC 137810 || | | ||| ||||| ||| | ||||||| ||| | ||||| ||| || Sbjct 260469 CTGTTAGCTTTGCCGGCCTT----TTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACC 260414 Query 137811 CATAACAATCGT-TAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCC--TCC 137867 | || || | || || ||||| | || |||||||| | ||||| | || | Sbjct 260413 CCAGAC-CTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTT 260355 Query 137868 CGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGC 137927 | ||| || | | ||| |||| | || |||| | |||| | | ||| || | || Sbjct 260354 CTTCC--ACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGC 260297 Query 137928 CTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATG 137987 ||||| ||| |||| ||||||||||||||| ||| || || | ||| Sbjct 260296 ACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATG 260237 Query 137988 CCAAGGCTCGATATAGACGGC 138008 |||||| || | |||| ||| Sbjct 260236 CCAAGGTTCCAAGTAGATGGC 260216 >seq404 Length=684826 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || || | || |||||| | ||||| | ||||||||| | Sbjct 509009 CATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATC 509068 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||||||| | || ||| |||||| |||||||| || || || || || || Sbjct 509069 CGATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCA 509128 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | | || | || |||||| ||| | ||||||| | | | ||||| || ||| Sbjct 509129 ACAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCA--GACTAC 509186 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || |||||||| ||| | |||||||| Sbjct 509187 AACATCCAGAAAGAATCTACCCTCCATTTAGT 509218 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | |||||||||||||| || || ||| | ||||| | || || | |||| Sbjct 506347 CATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTG-AGCCTT 506405 Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | ||||| || || | || ||| |||||| || ||||| || || || || || | Sbjct 506406 CTGATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACC 506465 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTA 25350 | || || | |||| || ||||| || || ||||| | || | |||| ||||| Sbjct 506466 AACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTC--TGATTA 506523 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||||||||||||| || | ||||| || || Sbjct 506524 CAATATTCAAAAAGAATCTACATTGCATTTGGTATT 506559 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || |||||||| |||||| | ||||| | ||||| ||| | Sbjct 506575 CATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTC 506634 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || || |||||| || ||||| ||||| || || ||||| Sbjct 506635 TGATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || | | |||| || ||||| ||| | ||||| | | | |||| ||| || Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTC--CGACTAT 506752 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||||||||| || | ||||| || Sbjct 506753 AACATTCAAAAAGAATCTACACTACATTTGGT 506784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445027402165440