Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 145 7e-30
seq404 107 2e-18
>seq1090
Length=275775
Score = 145 bits (160), Expect = 7e-30
Identities = 891/1401 (64%), Gaps = 68/1401 (5%)
Strand=Plus/Minus
Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698
|| |||||||| || | ||| || || ||||||||||||| ||| ||||||||||||||
Sbjct 261579 ACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTA 261520
Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758
| || | ||||||||| |||||| || | ||| | ||| | || ||||||
Sbjct 261519 AGGCCAGCTTTCCAGGAATAGAAATGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCC 261460
Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818
|| | ||| | ||||| || || || ||| ||| ||| || || || ||||| ||
Sbjct 261459 ACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCAGCCAT-TTT 261401
Query 136819 AATAGTACTTTTTGC-TTAATTTCCCAAGCGGTTTTAAAGAGCTC---CTTGACATTGGG 136874
||| || | || | ||||||||| | ||||| ||||||| | | |||
Sbjct 261400 AATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATTTCTTTG-- 261343
Query 136875 CGGAATTTCATCGATATTCTGTACAGATCCGTTGTT--------TTTGATGAT---TTTC 136923
|||||||| ||||| || |||| || || | | ||| || | ||||
Sbjct 261342 -GGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTCATTTC 261284
Query 136924 ATCATGAGATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTT 136983
|||| || ||||||| | | || | |||| | | ||| |||||
Sbjct 261283 CTCATCCCATAGGTCGAGT-----TCGGTC---AAATCTTTA---AGCAAATGATGATTG 261235
Query 136984 ACTA-CTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTC 137042
|| | |||| |||| |||||||| || | |||| || | || |||| |||| ||
Sbjct 261234 ACAATGTTGA-ATTCACCCGATAGTACACGGCGTGTATAAATGTTTGAAGTGTACGGTTC 261176
Query 137043 GAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAA 137102
||| | ||| ||||| |||| ||| || ||||||| || || |||||| || | |
Sbjct 261175 GAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAG 261116
Query 137103 CAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAG 137162
|| ||||| |||| ||| ||| ||| | | || ||| || | ||| | ||| ||
Sbjct 261115 CAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAG 261056
Query 137163 ATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACT 137222
|| | | | | | ||||||| ||| | || | | || || | || ||
Sbjct 261055 ATCGGTGG---GCACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCT 260999
Query 137223 TTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGC 137282
| ||| ||| | ||||| | || | ||| |||| |||| ||| | | ||
Sbjct 260998 TCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAGC 260939
Query 137283 GCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTA 137342
||||||||||||||||| | |||| | |||||||| || || | ||| |||||
Sbjct 260938 ACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGTA 260879
Query 137343 GGGCATATC-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTC 137401
||| ||| | || | | | || ||| |||| || || | ||| || || || || |
Sbjct 260878 GGG-ATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGAC 260820
Query 137402 TGTGTTTAAAATTTGATATT-TGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATT 137460
||| | | ||| ||| || || | | | || ||||| |||| | ||||| |||
Sbjct 260819 GATGTCTGAGATTAGATTTTCTGGCCTCCTGC-AGTGGATAGTAGTTGACATCTATGATT 260761
Query 137461 CTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTC--GAAATCGAAGC 137518
| ||||||||| | |||||| | || ||| | | | | ||| || || ||
Sbjct 260760 TTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCA--ATTTCTTAAAGTCAAAAG 260703
Query 137519 TTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCG 137578
|||| | || | |||| | || | | ||| ||||| |||||||| || ||
Sbjct 260702 TTTT--TTCGGGCGTCA-CAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGA 260646
Query 137579 TTTCTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCAC 137636
|||| | || |||| |||| || ||||| | ||| | ||||||| | ||
Sbjct 260645 TTTC-ATCCGGT-GCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGT 260588
Query 137637 TCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGA-TCTTTATATATCATATACGGAG 137695
|| | ||| | |||||| |||| || | || || || ||| ||| ||| || ||||
Sbjct 260587 GCCAACATTTTGTTGATTACTTTT-GCGATTACAAGAGTCCTTAAATAGCATGTAGGGAG 260529
Query 137696 TTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTT 137755
|||| ||||| ||||| | || | ||| ||| || |||| ||| | |||
Sbjct 260528 TTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCGCCTTAA-TGGTT 260470
Query 137756 CTCTAAACTT-----GCCTTGAGCTTCAAAACTTTCGTATAGCCGTTTAAATTTTTCGCC 137810
|| | | ||| ||||| ||| | ||||||| ||| | ||||| ||| ||
Sbjct 260469 CTGTTAGCTTTGCCGGCCTT----TTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACC 260414
Query 137811 CATAACAATCGT-TAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCC--TCC 137867
| || || | || || ||||| | || |||||||| | ||||| | || |
Sbjct 260413 CCAGAC-CTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTT 260355
Query 137868 CGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGC 137927
| ||| || | | ||| |||| | || |||| | |||| | | ||| || | ||
Sbjct 260354 CTTCC--ACACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGC 260297
Query 137928 CTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATG 137987
||||| ||| |||| ||||||||||||||| ||| || || | |||
Sbjct 260296 ACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATG 260237
Query 137988 CCAAGGCTCGATATAGACGGC 138008
|||||| || | |||| |||
Sbjct 260236 CCAAGGTTCCAAGTAGATGGC 260216
>seq404
Length=684826
Score = 107 bits (118), Expect = 2e-18
Identities = 152/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | || || || || | || |||||| | ||||| | ||||||||| |
Sbjct 509009 CATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATC 509068
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|||||||||||| | || ||| |||||| |||||||| || || || || || ||
Sbjct 509069 CGATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCA 509128
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351
||| | | || | || |||||| ||| | ||||||| | | | ||||| || |||
Sbjct 509129 ACAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCA--GACTAC 509186
Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| || || |||||||| ||| | ||||||||
Sbjct 509187 AACATCCAGAAAGAATCTACCCTCCATTTAGT 509218
Score = 98.7 bits (108), Expect = 9e-16
Identities = 154/216 (71%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | |||||||||||||| || || ||| | ||||| | || || | ||||
Sbjct 506347 CATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTG-AGCCTT 506405
Query 25234 C-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292
| ||||| || || | || ||| |||||| || ||||| || || || || || |
Sbjct 506406 CTGATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACC 506465
Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTA 25350
| || || | |||| || ||||| || || ||||| | || | |||| |||||
Sbjct 506466 AACAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTC--TGATTA 506523
Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||||||||||||||| || | ||||| || ||
Sbjct 506524 CAATATTCAAAAAGAATCTACATTGCATTTGGTATT 506559
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
||||||| | || || || |||||||| |||||| | ||||| | ||||| ||| |
Sbjct 506575 CATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTC 506634
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|||||||| || | || || |||||| || ||||| ||||| || || |||||
Sbjct 506635 TGATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCA 506694
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351
|| | | |||| || ||||| ||| | ||||| | | | |||| ||| ||
Sbjct 506695 ACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTC--CGACTAT 506752
Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| |||||||||||||| || | ||||| ||
Sbjct 506753 AACATTCAAAAAGAATCTACACTACATTTGGT 506784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445027402165440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |