Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq404 93.3 3e-14
>seq404
Length=684826
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||| || || || || |||| || || ||||| || | ||| ||||| |
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| || | | | |||||| |||||| || ||||||||| | ||| || |||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | || | || ||||| ||||| |||||| | ||| || || ||||||
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| || ||||||||||| || ||||||||
Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGT 509218
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||||||||| || || || |||||||| ||||| ||||| ||||| ||||||
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | | | | || || |||||| || ||||||||| | ||| |||||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | | || | ||| |||||||| || |||||| | || || || ||||||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| || || ||||| ||||| ||||| ||
Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGT 509446
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||| ||||| |||||||||||||| || ||||| ||| |||| || ||
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | || ||| |||||| ||||||||||| | || || |||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | | |||| || ||||| || | ||||| ||| || ||||||||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472
|| ||||||||||||||| | ||||| ||||||
Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTG 506560
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||| || ||||| ||||| || || || || || || ||||| |||||
Sbjct 506576 ATGCAAATATTCGTTAAGACATTAACGGGAAAAACTATCACACTGGAAGTTGAACCTTCT 506635
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| || | | | || || |||||| ||||||||||| | ||| ||||||
Sbjct 506636 GATACTATAGAAAATGTTAAGGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAA 506695
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | | |||| || ||||| ||||| ||||| || || ||| || |||
Sbjct 506696 CAGCGTTTGATTTTCGCTGGCAAGCAATTGGAAGACGGACGTACATTGTCCGACTATAAC 506755
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||||||||||||||||||||| ||
Sbjct 506756 ATTCAAAAAGAATCTACACTACATTTGGT 506784
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 106254 TTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAA 106313
|| || ||||| || || || || ||||| |||||||||||||| || |||| |||
Sbjct 506114 TTCAATATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAA 506173
Query 106314 CCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTT 106373
||| ||| | ||| | || ||| || ||| || ||||||||| | ||
Sbjct 506174 CCCTCTGATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCA 506233
Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433
||||||||| | | || | ||| || ||||| | |||||| || || ||||
Sbjct 506234 GATCAACAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGAT 506293
Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGT 106468
|| || || ||||| ||||||||||| ||||| ||
Sbjct 506294 TATAATATCCAAAAGGAATCTACACTTCATTTGGT 506328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402270553353536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |