Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1090 156 4e-33 seq404 143 3e-29 seq1094 134 1e-26 seq1431 129 6e-25 >seq1090 Length=275775 Score = 156 bits (172), Expect = 4e-33 Identities = 887/1409 (63%), Gaps = 30/1409 (2%) Strand=Plus/Plus Query 7531 TTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTG 7590 |||||||| || || | || ||||| ||||| |||||| |||| ||||| || Sbjct 259793 TTGAAAATGAATGGTAAGATTGCCGAACGGCCGCAACATATGCTGATGCGTGTGGCCGTA 259852 Query 7591 GGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAA 7650 || ||||| || || ||||| || | ||| | ||||| || | | |||| | Sbjct 259853 GGTATTCATGGAGAGGACATAGATTCGGCCATTGAAACTTATAACTGGTTGTCCGAGCGT 259912 Query 7651 CAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCC 7710 | ||||| || || |||||||| ||||||| || | |||||| || |||||||| Sbjct 259913 TACTTTACCCATGCATCGCCCACATTGTTTGCTGCAGCCACAAATCGTCCACAATTGTCT 259972 Query 7711 TCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGC 7770 || ||||| | | |||||| | || || || ||||||| || | || Sbjct 259973 TCTTGTTTCCTCTTGACCATGGTTGCCGATTCTATTGAGGGCATTTTTAAGTCTGTGGAG 260032 Query 7771 GATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGC 7830 | || || | |||||||||| | || || || || | || || | | | ||| Sbjct 260033 CAGTGTGCTATGATTTCCAAATCAGCTGGAGGTATTGGAATCAATGTCCATTGCATTCGC 260092 Query 7831 GCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890 || || || | ||| | ||| || |||| ||| ||||| | ||||||||| Sbjct 260093 GCTAAGGGAACTTCCATAGCCGGCACTAATGGAACCTCCAATGGTTTGGTGCCCATGTTA 260152 Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCC 7947 | || |||||||| | | || | || || ||||| || || || || || Sbjct 260153 AGAGTATTCAATAATGTTGCACGCTACGTTGATCAGGGTGGTGGCAAACGTCCTGGTGCA 260212 Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGC 8007 ||||||||| ||||| || ||||| ||||||| | | ||| | || | Sbjct 260213 TTTGCCATCTACTTGGAACCTTGGCATTCGGACATCTTTG-AGTTTT-----TGGATTTA 260266 Query 8008 AACATGGGTTGCG---AAGAC-AGCAAAGCGC--GCGATCTATTCTTCGGATTGTGGGTG 8061 || | | | || |||| |||| | || | ||||| |||| | | ||| | Sbjct 260267 AAAAAGAATACCGGCAAAGAAGAGCATCGTGCCAGAGATCTTTTCTATGCTCTTTGGATA 260326 Query 8062 CCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGAT 8121 || ||| |||||||| | || || | ||| | ||||| || ||||| || | Sbjct 260327 CCAGATTTGTTTATGCGACGTGTGGAAGAAAACGGCGATTGGTCCCTAATGTGTCCTCAC 260386 Query 8122 CGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATAC 8181 || || | | | | || | ||| | ||||||| | | ||| || ||||| Sbjct 260387 AAATGTCCAGGACTCCATGAGGTCTGGGGTGAAGAATTTGACAAGCTTTACGAAAAATAC 260446 Query 8182 GAACACGACGGC---GCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATT 8238 ||| | | |||| || || | || | || |||| | || |||||| Sbjct 260447 GAAAAGGCCGGCAAAGCTAACA-GAACCA--TTAAGGCGCAGGCGCTTTGGTTTGCCATT 260503 Query 8239 ATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCC 8298 || |||| ||| ||||| || | || |||||||| | || ||| |||| || | Sbjct 260504 ATAGAATCCCAAGTAGAAACTGGAACTCCCTACATGCTATTTAAGGACTCTTGTAATCGC 260563 Query 8299 AAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTA 8358 ||||| |||||| || || ||||||||| ||||||||| ||||| | ||||| || Sbjct 260564 AAAAGTAATCAACAAAATGTTGGCACCATTAAATGCAGCAATTTGTGCACAGAAATCGTT 260623 Query 8359 CAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCG 8418 | || || || || ||| | || || ||||| | || || | || | ||| | Sbjct 260624 GAATATTCAGCACCGGATGAAATCGCTGTCTGCAACTTGGCCTCCATTTGCCTGAACATG 260683 Query 8419 TTCGTTGATCGACGCTC--AAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAG 8476 || || ||||| | ||| |||| |||||| | ||||||| | | ||| Sbjct 260684 TTTGT-----GACGCCCGAAAAAACTTTTGACTTTAAGAAATTGAAGACAGTATCTAAAG 260738 Query 8477 TGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGC 8536 | || |||||| | | ||||| |||||||| | ||||| || | || || Sbjct 260739 TCGTGGCGCGCAATCTCAACAAAATCATAGATGTCAACTACTATCCACTGCAGGAGGCCA 260798 Query 8537 GCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGT 8596 | ||| || | | || | ||| ||||| | || || || ||| | ||||| | Sbjct 260799 GAAAATCTAATCTCAGACATCGTCCCATTGGCATTGGTGTCCAGGGTTTTGCCGATACTC 260858 Query 8597 TTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAG 8656 | | |||| |||||||||||| | || || || | || | ||||| Sbjct 260859 TAATTCTCATGCGTTATCCCTACGAAAGCGAGGAGGCCTTCAAATTGAATCAACAAATAT 260918 Query 8657 CGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCA 8716 ||||| | || || || || || ||||| || ||| || | || | || || Sbjct 260919 TTGAAACTATTTACTATGGTGCTTTGGAAGCAAGTTGTGAATTGGCTGAACAAGATGGTC 260978 Query 8717 CGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGA 8776 | || ||| |||| | || ||||| | ||| || ||| | ||||| |||||||||| Sbjct 260979 CCTATGAAACGTATCCAGGAAGCCCAGTGAGCAAAGGTATACTTCAATATGACATGTGGA 261038 Query 8777 ATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAA-AATTGCTCAATTC 8835 | ||||||| | | ||| ||||| | | ||| | || |||||| || Sbjct 261039 ACAAGGTGCCCACCGATCTCTGGGATTGGGCTGCCCT-AAAGGAAAGAATTGCCAAACAT 261097 Query 8836 GGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATG 8895 ||| | |||||||||||| | |||| ||||||||| || ||||||| ||||| ||| Sbjct 261098 GGTGTACGCAATTCGCTGCTCCTGGCCCCCATGCCCACGGCTTCGACTGCCCAAATTATG 261157 Query 8896 GGAAACAACGAATCCTTTGAGCCGTTCAC 8924 || ||||| ||| | || || |||| ||| Sbjct 261158 GGCAACAATGAAGCTTTCGAACCGTACAC 261186 >seq404 Length=684826 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || || | ||| | || || || |||||||| || ||||||||||| | | Sbjct 509464 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGAC 509405 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || || || || | ||||||||| ||||| |||||||| |||||||| || || Sbjct 509404 AATG-TGCGACCATCTTCCAACTGTTTGCCGGCAAAGATCAAACGTTGCTGATCTGGGGG 509346 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| ||||||||||| ||||| || | || || || | |||||| Sbjct 509345 AATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTTTCTATGGTATCAGAGGGTTCCAC 509286 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || || ||||| || |||||||||||||| Sbjct 509285 TTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAAATTTGCAT 509238 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 ||||| || ||||| ||||||||||| |||||| | || | ||| || | || Sbjct 506778 TGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCCAATTGC 506719 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || |||||||||||||| ||||| || || || |||||||| ||||||||||| Sbjct 506718 TTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGAATTTTG 506659 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || || | ||| || || || || || ||||| || ||| Sbjct 506658 GCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTTCCCGTT 506599 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| |||||||| Sbjct 506598 AATGTCTTAACGAATATTTGCAT 506576 Score = 123 bits (136), Expect = 3e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| ||||| || | || || || || ||||| || |||||||||||| Sbjct 507030 CCACCACGGAGACGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG-- 506973 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || |||| || || || | ||| ||||| || |||||||||||||| || || || | Sbjct 506972 ACAGTGTACGACCATCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGG 506913 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || |||||||| || ||| || || | ||||| || | || | Sbjct 506912 GAATGCCTTCCTTGTCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGA 506853 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || |||||||| || || || || || ||||| |||||||| Sbjct 506852 CTTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 506804 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || ||||| || | || | || ||||| |||||||| ||||| || | ||| | | | Sbjct 506565 AGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTTC-G 506507 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || ||||| ||||| || |||||||| ||||| || || || || || ||||| Sbjct 506506 CCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGTGGGATTCCTTC 506447 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 ||| ||||||||||| ||| || || | || || || | || || || | || Sbjct 506446 TTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCAACCTCCAAGGT 506387 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || || ||||| || || |||||||| Sbjct 506386 GATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||||||||| || || || ||| | ||| | || || |||||| Sbjct 506322 TGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCCAGCTGT 506263 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||||||| || ||||| || || ||||||||||| |||||||| || Sbjct 506262 TTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGAATCTTG 506203 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || || | ||| || || | || ||||| || || ||| Sbjct 506202 GCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTGCCAGTT 506143 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| ||| Sbjct 506142 AATGTCTTCACGAAGATCTGCATATTG 506116 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || ||||| || || ||||||||||| | ||| | || || || || | || Sbjct 509212 TGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAG-TGCGACCATCTTCCAATTG 509154 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || || || || || ||||||||||| ||||||||||| Sbjct 509153 CTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGAATTTT 509094 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | || ||||| | ||| || || | || |||||||| || || Sbjct 509093 AGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTTCCTGT 509034 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 509033 CAGGGTCTTGACGAAGATTTGCAT 509010 >seq1094 Length=241507 Score = 134 bits (148), Expect = 1e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || || |||||||||||||||||||| | ||| |||| || || || | |||||||| Sbjct 166085 GTCGACTCCTTTTGAATGTTGTAGTCTGACAA-GGTGCGACCATCCTCCAATTGTTTGCC 166143 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||| |||||||| || ||||| || || || |||||||| ||||| ||||| || Sbjct 166144 AGCAAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTT 166203 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 ||| || | |||||||| | || || || | ||||||||||||||||||| || Sbjct 166204 GACATTTTCAATAGTGTCGGAAGGCTCTACCTCCAAGGTAATGGTTTTACCGGTTAGGGT 166263 Query 134696 TTTAACGAAAATTTGCATTTT 134716 || || || || |||||||| Sbjct 166264 CTTGACAAAGATCTGCATTTT 166284 >seq1431 Length=173026 Score = 129 bits (142), Expect = 6e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAG 134556 |||||| || | || ||||| ||||||||||| ||||||||||| | |||| | || Sbjct 151309 TCGCAAAACTAAATGAAGCGTTGATTCCTTTTGTATGTTGTAGTCTGATAACG-TACGAC 151251 Query 134557 AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTT 134616 || || |||||||| || ||||| || ||||| || ||||| || || || || |||| Sbjct 151250 CATCTTCAAGCTGTTTTCCGGCAAATATTAAACGTTGTTGATCAGGTGGAATTCCCTCTT 151191 Query 134617 TTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAA 134676 | || ||||| || || || || | ||| || |||| || || || || |||| Sbjct 151190 TGTCCTGAATCTTGGCCTTTACATTTTCTATTGTATCAGACGGCTCAACTTCAAGCGTAA 151131 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 |||| || || ||||||||||| || ||||| ||||| || Sbjct 151130 TGGTCTTGCCCGTTAAAGTTTTGACAAAAATCTGCATCTT 151091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505322324905840