Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 471 6e-128
seq305 242 5e-59
seq294 87.8 2e-12
>seq1090
Length=275775
Score = 471 bits (522), Expect = 6e-128
Identities = 1223/1845 (66%), Gaps = 38/1845 (2%)
Strand=Plus/Minus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| ||||| || | | ||| ||||| || || || || || |||| ||||||
Sbjct 261555 GCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAA 261496
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
|| || || | |||| || | || ||||| | ||| ||||| | |||||||||
Sbjct 261495 TGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTT 261436
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574
|| || ||||||||||| | ||| || |||||||| || | |||| || |||||||
Sbjct 261435 TGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCC 261376
Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGAT 68631
|| | || || | | || | || || | |||| |||| | ||||| |||||
Sbjct 261375 CATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGGAATTTCCTCGATGTTTTGTATGGAG 261316
Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691
|||| || |||||| |||| || || || |||| ||| | | || || |||
Sbjct 261315 CCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAAA 261256
Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751
|| |||| | ||| |||| || || | ||||| || |||| || | || || |||
Sbjct 261255 TCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAA 261196
Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811
|| || || || ||||| | || |||||| || |||| |||||| ||||| || ||
Sbjct 261195 ATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCC 261136
Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTT 68871
|| ||||| || |||| | | ||| | | ||||||| | ||| | || |||
Sbjct 261135 GTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTT 261076
Query 68872 AGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATT 68931
|| ||||||||| ||||| | || || ||||| | || ||||| || ||
Sbjct 261075 AGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATA 261016
Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991
|| || || | ||| ||| |||||||| || || || |||||||| | ||||
Sbjct 261015 CCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCA 260956
Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG- 69050
|||||||| || || ||||| || ||||| ||||| || || | | ||| | || |||
Sbjct 260955 CAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCA-AT-TTGA 260898
Query 69051 -TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAA 69109
|| || || ||| | |||||| | | ||||| | | ||| || || ||||| |
Sbjct 260897 AGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGA 260838
Query 69110 CCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAG--CTTCTGGAATAGGATA 69167
| ||||| || || || | |||||| ||| | | |||| | || ||| | | |||||
Sbjct 260837 CACCAATGCCAATGGGACGATGTCTGAGATTAG-ATTTTCTGGCCTCCTGCAGT-GGATA 260780
Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227
|| || | |||||| ||||| || ||||| || | || |||||| || ||| |
Sbjct 260779 GTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAA 260720
Query 69228 TTTGAGAAAATCAAA-------TCGTCCATCTATAACAAACATATTCAGTGCTACAGATG 69280
||| ||| ||||| ||| | || |||||||| ||||| | || |
Sbjct 260719 TTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC----ACAAACATGTTCAGGCAAATGGAGG 260664
Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340
| | || || || || | |||| | || ||||| | || ||||| || | ||
Sbjct 260663 CCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAAT 260604
Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400
| || ||||| || || || | |||||| |||||||| || ||||| | ||||||
Sbjct 260603 TGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAA 260544
Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460
| || || | ||||| |||||||| | || ||||| ||||| | ||||| ||
Sbjct 260543 ATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCT 260484
Query 69461 TAGCATTTATTACGGTCTTGTAACGCTT----CTCTTTTTCATATTGTGTATATAGCCGT 69516
|| || || ||| ||| | |||| | ||||| |||| | || |||
Sbjct 260483 GCGCCTTAAT---GGTTCTGTTA-GCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTG 260428
Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576
|| ||||| || ||||| || |||| | ||| ||||||| | |||||||| | |||
Sbjct 260427 TCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGAC 260368
Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635
|| | | | || | || ||| |||||| | ||| || ||||||||||| ||| ||
Sbjct 260367 CAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGC-ATAGAA 260309
Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695
|||||||||| | || ||||| || || ||||| ||||| | ||| | |||||| |
Sbjct 260308 AAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAA 260249
Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755
|| || |||||||| ||||| | || || || | | || || ||||| || ||
Sbjct 260248 GATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACC 260189
Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815
|||||| | ||| | ||| ||||| | ||||| | ||| || | | |||||| ||
Sbjct 260188 CTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGA 260129
Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGA 69873
| ||||| || || | || || |||| | |||||||| | | || |||
Sbjct 260128 GGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGAT--T 260071
Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933
|| || ||||| || ||| || || | |||||| | | || | | | | || |||
Sbjct 260070 CCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCC 260011
Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993
|| || ||| | | |||| | | || ||||| ||||| ||| || | | ||
Sbjct 260010 TCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTG 259951
Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCAGATTGTA 70052
| ||| ||| ||||| || ||||| || || || | || || || ||| || ||
Sbjct 259950 GCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAG-TTATA 259892
Query 70053 TGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACAT 70112
|||||||| || || ||||| ||| |||||| |||| || |||||||||| |||
Sbjct 259891 AGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCAT 259832
Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172
||| || || ||||| | | ||| ||| |||||||| || ||||| ||| |||||
Sbjct 259831 ATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGT 259772
Query 70173 TTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
||||| ||||| |||||||| ||| || | ||||| | |||
Sbjct 259771 CTTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCGTATACAAT 259727
>seq305
Length=710094
Score = 242 bits (268), Expect = 5e-59
Identities = 478/703 (68%), Gaps = 7/703 (1%)
Strand=Plus/Plus
Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510
|||||| |||||||| || || ||| | ||||||||||| || || | ||
Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441
Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG--AT 39568
||| | || || || || || || | |||||| | || || ||| |||||||| ||
Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501
Query 39569 GTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCA 39628
| ||| ||| | | || |||| | || |||||||| || || || |||
Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACAGCAAAATCA 408559
Query 39629 CAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGA 39688
||||| | || || || | || | ||||| || ||||| | || ||||||||
Sbjct 408560 CAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGG 408619
Query 39689 CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748
||||| || || | ||| || |||| |||||| || ||||| |||||||| ||
Sbjct 408620 CCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACA 408679
Query 39749 GCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGT 39805
|| ||||| || | | | || || || | | | || ||| |||||| |
Sbjct 408680 GCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAAA 408739
Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865
|||||||||||||| | || ||| ||||| ||||| || ||||| || | ||| |
Sbjct 408740 GCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTCA 408799
Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925
|| |||| |||||||| ||| || || || | | || |||||||| || || |
Sbjct 408800 CGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAACA 408859
Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985
|| || || || ||||| || || || || || | |||||||| | ||| |||||| |
Sbjct 408860 TTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTGA 408919
Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045
||||||| || | | ||| ||||| ||||| ||||| || ||||| || |||||
Sbjct 408920 GAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAAC 408979
Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105
||||| ||| |||||| |||||| | ||| | ||| | ||||||| ||||||||
Sbjct 408980 ACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTA 409039
Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
|| | ||| ||||| ||| | |||||||| || ||||| ||||
Sbjct 409040 GACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082
>seq294
Length=746123
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 34709 TCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGATAAATGTGTGCA 34768
|| |||||||| |||| ||| ||||| |||||||| || || || ||||||| |||| |
Sbjct 702181 TCTTTGACCTGCGTTAAAGACCGCCAGTCCATATTGGCGCTGCCGAGATAAACGTGTTTA 702122
Query 34769 TTATCCGATATCCAAAATTTTGTATGAAGAACACCGCC 34806
| |||||||||||||| ||||| || | ||| || ||
Sbjct 702121 TGGTCCGATATCCAAAACTTTGTGTGCAAAACCCCACC 702084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686805403052880
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