Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1090 471 6e-128 seq305 242 5e-59 seq294 87.8 2e-12 >seq1090 Length=275775 Score = 471 bits (522), Expect = 6e-128 Identities = 1223/1845 (66%), Gaps = 38/1845 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| || | | ||| ||||| || || || || || |||| |||||| Sbjct 261555 GCTGGTTTAGTTCTCAAATAATACATGCCCGTCTTAAGGCCAGCTTTCCAGGAATAGAAA 261496 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || || | |||| || | || ||||| | ||| ||||| | ||||||||| Sbjct 261495 TGTATTGAAGTCAATTTGCCGTAGTTGGGCTCGGCCACATGTATATTGAAGGATTGACTT 261436 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || ||||||||||| | ||| || |||||||| || | |||| || ||||||| Sbjct 261435 TGGTCAATGAAAGCTCCACGATCAGCAGCCATTTTAATGGTGGTCTTGACAGAAATTTCC 261376 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGAT 68631 || | || || | | || | || || | |||| |||| | ||||| ||||| Sbjct 261375 CATACCGTTTTGTAGAGCTCTCGTATTTCTTTGGGAATTTCCTCGATGTTTTGTATGGAG 261316 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 |||| || |||||| |||| || || || |||| ||| | | || || ||| Sbjct 261315 CCACGGCTAGAAATAATTTTATTTTTCATTTCCTCATCCCATAGGTCGAGTTCGGTCAAA 261256 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 || |||| | ||| |||| || || | ||||| || |||| || | || || ||| Sbjct 261255 TCTTTAAGCAAATGATGATTGACAATGTTGAATTCACCCGATAGTACACGGCGTGTATAA 261196 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 || || || || ||||| | || |||||| || |||| |||||| ||||| || || Sbjct 261195 ATGTTTGAAGTGTACGGTTCGAAAGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCC 261136 Query 68812 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTT 68871 || ||||| || |||| | | ||| | | ||||||| | ||| | || ||| Sbjct 261135 GTGGGCATGGGGGCCAGGAGCAGCGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTT 261076 Query 68872 AGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATT 68931 || ||||||||| ||||| | || || ||||| | || ||||| || || Sbjct 261075 AGGGCAGCCCAATCCCAGAGATCGGTGGGCACCTTGTTCCACATGTCATATTGAAGTATA 261016 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || || || | ||| ||| |||||||| || || || |||||||| | |||| Sbjct 261015 CCTTTGCTCACTGGGCTTCCTGGATACGTTTCATAGGGACCATCTTGTTCAGCCAATTCA 260956 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG- 69050 |||||||| || || ||||| || ||||| ||||| || || | | ||| | || ||| Sbjct 260955 CAACTTGCTTCCAAAGCACCATAGTAAATAGTTTCAAATATTTGTTGATTCA-AT-TTGA 260898 Query 69051 -TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAA 69109 || || || ||| | |||||| | | ||||| | | ||| || || ||||| | Sbjct 260897 AGGCCTCCTCGCTTTCGTAGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGA 260838 Query 69110 CCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAG--CTTCTGGAATAGGATA 69167 | ||||| || || || | |||||| ||| | | |||| | || ||| | | ||||| Sbjct 260837 CACCAATGCCAATGGGACGATGTCTGAGATTAG-ATTTTCTGGCCTCCTGCAGT-GGATA 260780 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227 || || | |||||| ||||| || ||||| || | || |||||| || ||| | Sbjct 260779 GTAGTTGACATCTATGATTTTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAA 260720 Query 69228 TTTGAGAAAATCAAA-------TCGTCCATCTATAACAAACATATTCAGTGCTACAGATG 69280 ||| ||| ||||| ||| | || |||||||| ||||| | || | Sbjct 260719 TTTCTTAAAGTCAAAAGTTTTTTCGGGCGTC----ACAAACATGTTCAGGCAAATGGAGG 260664 Query 69281 CTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGAT 69340 | | || || || || | |||| | || ||||| | || ||||| || | || Sbjct 260663 CCAAGTTGCAGACAGCGATTTCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAAT 260604 Query 69341 TACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGT 69400 | || ||||| || || || | |||||| |||||||| || ||||| | |||||| Sbjct 260603 TGCTGCATTTAATGGTGCCAACATTTTGTTGATTACTTTTGCGATTACAAGAGTCCTTAA 260544 Query 69401 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCC 69460 | || || | ||||| |||||||| | || ||||| ||||| | ||||| || Sbjct 260543 ATAGCATGTAGGGAGTTCCAGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCT 260484 Query 69461 TAGCATTTATTACGGTCTTGTAACGCTT----CTCTTTTTCATATTGTGTATATAGCCGT 69516 || || || ||| ||| | |||| | ||||| |||| | || ||| Sbjct 260483 GCGCCTTAAT---GGTTCTGTTA-GCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTG 260428 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| || ||||| || |||| | ||| ||||||| | |||||||| | ||| Sbjct 260427 TCAAATTCTTCACCCCAGACCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGAC 260368 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || | | | || | || ||| |||||| | ||| || ||||||||||| ||| || Sbjct 260367 CAATCGCCGTTTTCTTCCACACGTCGCATAAACAAATCTGGTATCCAAAGAGC-ATAGAA 260309 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 |||||||||| | || ||||| || || ||||| ||||| | ||| | |||||| | Sbjct 260308 AAGATCTCTGGCACGATGCTCTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAA 260249 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 || || |||||||| ||||| | || || || | | || || ||||| || || Sbjct 260248 GATGTCCGAATGCCAAGGTTCCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACC 260189 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 |||||| | ||| | ||| ||||| | ||||| | ||| || | | |||||| || Sbjct 260188 CTGATCAACGTAGCGTGCAACATTATTGAATACTCTTAACATGGGCACCAAACCATTGGA 260129 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAGATAGA 69873 | ||||| || || | || || |||| | |||||||| | | || ||| Sbjct 260128 GGTTCCATTAGTGCCGGCTATGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGAT--T 260071 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || ||||| || ||| || || | |||||| | | || | | | | || ||| Sbjct 260070 CCAATACCTCCAGCTGATTTGGAAATCATAGCACACTGCTCCACAGACTTAAAAATGCCC 260011 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || ||| | | |||| | | || ||||| ||||| ||| || | | || Sbjct 260010 TCAATAGAATCGGCAACCATGGTCAAGAGGAAACAAGAAGACAATTGTGGACGATTTGTG 259951 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA-AAGCAGATTGTA 70052 | ||| ||| ||||| || ||||| || || || | || || || ||| || || Sbjct 259950 GCTGCAGCAAACAATGTGGGCGATGCATGGGTAAAGTAACGCTCGGACAACCAG-TTATA 259892 Query 70053 TGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 |||||||| || || ||||| ||| |||||| |||| || |||||||||| ||| Sbjct 259891 AGTTTCAATGGCCGAATCTATGTCCTCTCCATGAATACCTACGGCCACACGCATCAGCAT 259832 Query 70113 ATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 ||| || || ||||| | | ||| ||| |||||||| || ||||| ||| ||||| Sbjct 259831 ATGTTGCGGCCGTTCGGCAATCTTACCATTCATTTTCAATAGATATGAGCGTTCTAGAGT 259772 Query 70173 TTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| ||||| |||||||| ||| || | ||||| | ||| Sbjct 259771 CTTAAATCCAAAGTAGTTGTAGCCAAAATCACGGTCGTATACAAT 259727 >seq305 Length=710094 Score = 242 bits (268), Expect = 5e-59 Identities = 478/703 (68%), Gaps = 7/703 (1%) Strand=Plus/Plus Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 |||||| |||||||| || || ||| | ||||||||||| || || | || Sbjct 408382 ATCTGCTACAAATTCAATATACTCGGACATTAAATCACAATTCATACCAATCAAATTGCA 408441 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG--AT 39568 ||| | || || || || || || | |||||| | || || ||| |||||||| || Sbjct 408442 TGGCAATGCTTCTGTAAGGAATTCCTGTTCGATTTTAACCGCTTCTCTTATTATCTCAAT 408501 Query 39569 GTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCA 39628 | ||| ||| | | || |||| | || |||||||| || || || ||| Sbjct 408502 GATACGTTCTCTGC--TGGGCTTCTGCACCAGATACTTAAACATCAATACAGCAAAATCA 408559 Query 39629 CAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGA 39688 ||||| | || || || | || | ||||| || ||||| | || |||||||| Sbjct 408560 CAATGCAAACCTTCGTCACGCGATATCAGCTCGTTGGAGAATGTTAAGCCGGGCATTAGG 408619 Query 39689 CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748 ||||| || || | ||| || |||| |||||| || ||||| |||||||| || Sbjct 408620 CCACGTTTCTTCAACCAGAAAATGGAGGCAAAACTGCCGCTGAAGAATATGCCTTCAACA 408679 Query 39749 GCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGT 39805 || ||||| || | | | || || || | | | || ||| |||||| | Sbjct 408680 GCAGCAAAAGCTATTACACGTTCACCAAAATTAGCAGAATCCGATGATATCCATGACAAA 408739 Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865 |||||||||||||| | || ||| ||||| ||||| || ||||| || | ||| | Sbjct 408740 GCCCAATCAGCTTTTCTTTTAACAGCTGGCATAGTTTCAATGGCATTGAATAAATATTCA 408799 Query 39866 TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATG 39925 || |||| |||||||| ||| || || || | | || |||||||| || || | Sbjct 408800 CGTTGGTCACGATCTTTAATATAGGTGTCAATAAGAATGCTGTACATTTCCGAGTGAACA 408859 Query 39926 TTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAA 39985 || || || || ||||| || || || || || | |||||||| | ||| |||||| | Sbjct 408860 TTCTCCATAGCAATCTGGAAGCCATAGAAGCAGCGGGCTTCAGTTACTTGCACCTCTTGA 408919 Query 39986 CAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAAT 40045 ||||||| || | | ||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 408920 GAAAATCTCTCGACAAGATTCTCATTAACTATGCCATCGGAGGCAGCAAAGAAAGCCAAC 408979 Query 40046 ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTT 40105 ||||| ||| |||||| |||||| | ||| | ||| | ||||||| |||||||| Sbjct 408980 ACATGGGAAATGAAATATCTTTCATTGTCTGTGAGTTTCTCCCAGTCAGACATATCTTTA 409039 Query 40106 GATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 || | ||| ||||| ||| | |||||||| || ||||| |||| Sbjct 409040 GACAGATCCACTTCCTCAACAGTCCAAAATGATGCCTCAGCCT 409082 >seq294 Length=746123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34709 TCCTTGACCTGTGTTAGAGAACGCCAATCCATATTAGCACTTCCTAGATAAATGTGTGCA 34768 || |||||||| |||| ||| ||||| |||||||| || || || ||||||| |||| | Sbjct 702181 TCTTTGACCTGCGTTAAAGACCGCCAGTCCATATTGGCGCTGCCGAGATAAACGTGTTTA 702122 Query 34769 TTATCCGATATCCAAAATTTTGTATGAAGAACACCGCC 34806 | |||||||||||||| ||||| || | ||| || || Sbjct 702121 TGGTCCGATATCCAAAACTTTGTGTGCAAAACCCCACC 702084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686805403052880