Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq326 230 2e-55 seq305 199 3e-46 seq43 131 1e-25 >seq326 Length=702362 Score = 230 bits (254), Expect = 2e-55 Identities = 393/570 (69%), Gaps = 0/570 (0%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||| | || ||||||||| | |||||||| ||||| ||||||| ||| ||||||||||| Sbjct 509755 GATCGAGAGGAAGGTGATTTGGGTCCTGTATATGGTTTTCAGTGGCGTCATTTTGGAGCT 509814 Query 40914 AAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTT 40973 || || ||| || | | ||| ||| | || |||| ||| || | ||| Sbjct 509815 AAGTACCGAACTTGCCACGATAACTATGACAACGAGGGTGTGGACCAACTAAAACAGGTT 509874 Query 40974 ATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 || |||| || | |||||||| | ||||||| || ||| ||| ||||| || Sbjct 509875 ATTCATACAATACGCACTAATCCCGATGACAGACGTATCATGATGTCCGCTTGGAATCCC 509934 Query 41034 ACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC 41093 | |||| | | |||||| ||||| || ||||||| || |||||||| ||| | Sbjct 509935 ATGGACATGCCGCAGATGGCTTTGCCTCCCTGTCATTGCTTGGCCCAGTTTTATGTTGCC 509994 Query 41094 AATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 |||||||| || || |||||||| |||||| | | |||||||| |||| || || Sbjct 509995 AATGGTGAGCTATCTTGTCAATTATATCAACGCAGTGCCGACATGGGCTTAGGAGTACCA 510054 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || ||||| || ||||| || | || ||||||||||| ||| | || |||| Sbjct 510055 TTCAACATTGCCTCATATGCCTTGTTGACCTATATGATTGCCCACATAACTGGCCTAAAG 510114 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCG 41273 |||||||| ||||| ||||| || || |||| ||| | || | || ||| | || || Sbjct 510115 CCTGGTGATTTTGTACACACATTGGGCGATGCCCATGTATATAAGAACCACGTTGAACCA 510174 Query 41274 TTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCT 41333 || | || ||| | | ||| ||||| ||||| ||||| | | | || ||||| Sbjct 510175 TTGAGGGAGCAATTAAAACGCAAACCCAGACCTTTTCCCAAATTGATAATCAAACGTAAA 510234 Query 41334 GTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTAC 41393 || ||| | ||||| || ||| | || ||||| | || ||||||||| || || Sbjct 510235 GTAGAAGATATTGAGGACTTTAAATTTGAAGATTTCGAAATTGTCGATTACAAACCATAT 510294 Query 41394 CCTAAAATCCACATGGACATGTCTGTATGA 41423 || ||||| || ||||| ||| |||| ||| Sbjct 510295 CCAAAAATTCAAATGGAAATGGCTGTTTGA 510324 >seq305 Length=710094 Score = 199 bits (220), Expect = 3e-46 Identities = 486/727 (67%), Gaps = 26/727 (4%) Strand=Plus/Minus Query 43755 AGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTG 43814 |||| ||||||||||| | || ||||| ||| || ||||||| | | | ||| Sbjct 409076 AGGCATCATTTTGGACTGTTGAGGAAGTGGATCTGTCTAAAGATATGTCTGACTGGGAGA 409017 Query 43815 CATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGC 43873 | | | | |||| |||| | |||| || || || ||||| || |||||||| | Sbjct 409016 AACTCACAG-ACAATGAAAGATATTTCATTTCCCATGTGTTGGCTTTCTTTGCTGCCTCC 408958 Query 43874 GACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933 || || ||||| ||||| ||| | || | ||| | ||||| || ||| || | ||| Sbjct 408957 GATGGCATAGTTAATGAGAATCTTGTCGAGAGATTTTCTCAAGAGGTGCAAGTAACTGAA 408898 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || || || ||||| || || ||||| || || ||| |||| |||||||||||||| Sbjct 408897 GCCCGCTGCTTCTATGGCTTCCAGATTGCTATGGAGAATGTTCACTCGGAAATGTACAGC 408838 Query 43994 CTTCTGATAGATACGTACATCAAAGATGG----GCACGAGAAGCATCGATTGTTTAATGC 44049 |||| || || || || || |||||| | ||| ||| || || || ||||| Sbjct 408837 ATTCTTATTGACACCTATATTAAAGATCGTGACCAACGTGAA-TAT---TTATTCAATGC 408782 Query 44050 GATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109 || ||||| | || || ||||| ||||| || ||||| | ||||||| || Sbjct 408781 CATTGAAACTATGCCAGCTGTTAAAAGAAAAGCTGATTGGGCTTTGTCATGGATA---TC 408725 Query 44110 AAATGATTC------TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 | ||||| |||||| ||||| | | || ||||| | ||| |||||||| || Sbjct 408724 ATCGGATTCTGCTAATTTTGGTGAACGTGTAATAGCTTTTGCTGCTGTTGAAGGCATATT 408665 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||| || ||||| |||| || ||||| |||||||| || | ||||| || || Sbjct 408664 CTTCAGCGGCAGTTTTGCCTCCATTTTCTGGTTGAAGAAACGTGGCCTAATGCCCGGCTT 408605 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 || || || || ||| | ||| ||||| ||||| || ||||| ||||||||| || Sbjct 408604 AACATTCTCCAACGAGCTGATATCGCGTGACGAAGGTTTGCATTGTGATTTTGCTGTATT 408545 Query 44284 GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTT 44341 | | || ||||| || | | ||||| || ||| || | || || | Sbjct 408544 GATGTTTAAGTATCT-GGTG--CAGAAGCC--CAGCAGAGAACGTATCATTGAGATAATA 408490 Query 44342 GTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATA 44401 ||| || || || || ||||| ||||| | ||| |||||| || ||||| || Sbjct 408489 AGAGAAGCGGTTAAAATCGAACAGGAATTCCTTACAGAAGCATTGCCATGCAATTTGATT 408430 Query 44402 GGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTG 44461 || |||||| ||| ||| | | |||||||||| | ||||||||| | || | Sbjct 408429 GGTATGAATTGTGATTTAATGTCCGAGTATATTGAATTTGTAGCAGATCGTCTGCTAGTC 408370 Query 44462 GAACTGG 44468 ||| ||| Sbjct 408369 GAATTGG 408363 >seq43 Length=1683053 Score = 131 bits (144), Expect = 1e-25 Identities = 277/410 (68%), Gaps = 14/410 (3%) Strand=Plus/Minus Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 ||| ||| ||| ||||| || || | || ||| | || ||||| || |||||| | || Sbjct 422005 CAACAGTGGTTTACACATAATTATTTTTGACGAAATCGATGCAATTTGCAAGCAACGTGG 421946 Query 19599 TTCTGGTGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 ||||| || | ||| || ||||| || || |||||||| | || | || | Sbjct 421945 TTCTGTTGCTGGCAACAGTGGTGTTCATGATACCGTGGTCAATCAGTTGTTGGCCAAGAT 421886 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATT 19712 || ||||| | ||| ||||||||||| |||| ||||| ||||| ||| | | || | Sbjct 421885 TGATGGTGTCGAGCAATTGAATAATATTCTAGTCATTGGTATGACCAATCGTCGTGACAT 421826 Query 19713 AATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACC 19772 || ||| |||||| | || || ||||| |||||| | | || ||||| | || || Sbjct 421825 GATTGACGATGCCTTACTGCGTCCTGGTCGTTTGGAAGTTCAAATGGAAATCAGTTTGCC 421766 Query 19773 CGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACA---AA 19828 | |||| || ||| ||||| |||| || ||||| | ||| ||||| | | Sbjct 421765 CAATGAGCAGGGTCGTTGTCAAATTCTAAATATCCATAC-TAAACGTATGCGTGATTTCA 421707 Query 19829 ATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATA 19888 |||| || || ||||||||| ||||| |||| || | ||||| || | | Sbjct 421706 ATAAGATT---GCTGCAGATGTAGATTGCAAAGAACTTGCTGCCTCCACCAAGAATTTCA 421650 Query 19889 GCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | || || ||| | ||||| || ||| | || |||||||| | ||| ||| Sbjct 421649 GTGGAGCTGAATTGGAGGGTTTGGTGCGTGCTGCCCAATCTACTGCTATG 421600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397397668612210