Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq1090 340 2e-88
seq404 123 2e-23
>seq1090
Length=275775
Score = 340 bits (376), Expect = 2e-88
Identities = 1018/1549 (66%), Gaps = 49/1549 (3%)
Strand=Plus/Minus
Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468
|| || |||||||| || ||||||| || || || || | ||||||||||||||| ||
Sbjct 261582 TCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTC 261523
Query 130469 TTGAGTCCAATTTTGTGTCCAT-AATTG---TGGATGCTGCACATTGTTTG--GTAATTG 130522
|| || ||| ||| ||| ||| | || || || | |||| ||| |||
Sbjct 261522 TTAAGGCCAGCTTT----CCAGGAATAGAAATGTAT--TGAAGTCAATTTGCCGTAGTTG 261469
Query 130523 GGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582
|| | ||||| ||| |||| ||||| ||| ||||| ||||| || | || |||
Sbjct 261468 GGCTCGGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCA 261409
Query 130583 GCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642
||||| | | |||| || || ||||| | || ||||| || || | ||
Sbjct 261408 GCCATTTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT 261349
Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702
| |||||| || | | || ||| | | || | | | ||||||| || |
Sbjct 261348 TCTTTGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTC 261289
Query 130703 ATACTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAATGAT 130761
|| | ||| | | | || | | ||| |||||| | |||||||| ||| | ||
Sbjct 261288 ATTTCCTCATCCCATAGGTCGAGTTCGGTCAA-ATCTTTAAGCAAATGATGATTGACAAT 261230
Query 130762 TTGAAAATCACCAGCCAGGAC---GCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818
| || ||||| | || || |||| || |||||||| ||| ||||||| ||
Sbjct 261229 GTTGAATTCACCCGATAGTACACGGCGTGTA---TAAATGTTTGAAGTGTACGGTTCGAA 261173
Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878
| ||| |||||||| | ||||| || || | || ||||||||| |||| | ||
Sbjct 261172 AGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAG 261113
Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938
||||| || | ||| || | | ||| || ||| | || |||||||||| |||
Sbjct 261112 CGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATC 261053
Query 130939 GGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT--- 130995
||| || || ||||||||||| ||| |||| ||||| ||||| || | || ||
Sbjct 261052 GGTGGGC---ACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCC 260996
Query 130996 -GGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAG 131054
|||| ||| ||| ||| || || ||||| || || ||||||||||
Sbjct 260995 TGGAT----ACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAG 260940
Query 131055 CTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGT 131114
| || || ||||| ||||| ||||||| ||| |||| || | | ||| ||||
Sbjct 260939 CACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGT 260880
Query 131115 AAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTC 131174
| ||| | ||| | ||| | || || || | |||||| | |||| ||| | || |
Sbjct 260879 AGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGAC 260820
Query 131175 TATGTTTTAAATTACATTTACGCGAA-CATTCGGTGGGATAAAGGTTAATGTCAATTATT 131233
|||| | | |||| |||| | | | | | |||| ||| ||| | || || |||
Sbjct 260819 GATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGG-ATAGTAGTTGACATCTATGATT 260761
Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293
||||| | ||||||| | || | || | || | |||||||| | || ||||| ||
Sbjct 260760 TTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTT 260701
Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTT 131353
||||| | | ||||| || | || || || |||| || || || || ||
Sbjct 260700 T---TTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATT 260644
Query 131354 TCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413
|| || | |||| | ||| ||||| | ||||||||| |||| || ||||||||
Sbjct 260643 TCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCA 260584
Query 131414 AAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCC 131472
| |||||||||||| ||||| || | ||| | |||||| | | ||||||||| || ||
Sbjct 260583 ACATTTTGTTGATTACTTTT-GCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCC 260525
Query 131473 CGTTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATAT 131530
||||| ||||| | ||| |||||| | | |||| | | || ||| | | |
Sbjct 260524 AGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCG---CCTTAATGGTTCT 260468
Query 131531 -TTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGA 131589
|| || |||| |||||||| |||||||| | | | ||||| | || || | ||
Sbjct 260467 GTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCA-GA 260409
Query 131590 ACT-GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAA 131648
|| | | ||||||| | ||||||||||| ||||| ||||||| | ||| |
Sbjct 260408 CCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCA 260349
Query 131649 CTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCT 131708
| || |||||||||||| || | ||| | || || || |||||||| || | ||
Sbjct 260348 CACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCT 260289
Query 131709 CTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTT 131768
||||| | || || | ||||| |||| ||||| || || ||||||| |||||| ||||
Sbjct 260288 CTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTT 260229
Query 131769 CCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCA 131825
|||| || | || | ||| || || || ||| || |||| ||| | || | |
Sbjct 260228 CCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAA 260169
Query 131826 TGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAA 131885
|| ||| |||| | ||||||||| ||||||| |||| | ||||||| |||| |
Sbjct 260168 CATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTA 260109
Query 131886 TGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934
|| | | || || || | || || || |||| ||||||||||||
Sbjct 260108 TGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGATTCCAATACCTCC 260060
>seq404
Length=684826
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || || | |||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 506576 TGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAG 506517
Query 27079 TCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137
|| |||| ||| ||||||| ||||| || || ||| |||| | |||||||| || ||
Sbjct 506516 ACAATGTT-CGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458
Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197
|| | || ||||| || || ||| ||| | |||| | || || | | |||
Sbjct 506457 GGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 506398
Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || | || || | ||| || |||| ||||| ||||||||||||||
Sbjct 506397 ACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||||| ||||| ||||||||||| || |||||| || | || |||||||
Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| || || || ||| |||| | |||||||||||| || || | ||| ||||| ||
Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| ||| || | |||||| ||| || | | ||||||||| || || |||| |||
Sbjct 506664 ATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTT 506605
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||||| | || || || || ||||||||
Sbjct 506604 CCCGTTAATGTCTTAACGAATATTTGCAT 506576
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
||||| || ||||| | ||||| || || || || ||||||||| || | || |
Sbjct 507018 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCA 506959
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| | ||| || |||||| |||| | ||||||||| || || || | || || ||
Sbjct 506958 TCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 506899
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| |||||| ||||| | |||| | ||||| | | || ||||| || || ||
Sbjct 506898 TCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATG 506839
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
| |||||| |||| || || || ||||||||||||
Sbjct 506838 GTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | ||||| || ||||| ||||| || ||| || | | || | |||||
Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCC 506269
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|||||||||||||| | || | ||| |||||||| || || | || ||||||||
Sbjct 506268 AGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 506209
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| ||| | |||| | || || | || |||||| || | || || | |||
Sbjct 506208 ATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTG 506149
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || | || ||||| ||||| ||||||
Sbjct 506148 CCAGTTAATGTCTTCACGAAGATCTGCATA 506119
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||| || || | || | |||||| || | || || ||||| || ||||| || ||
Sbjct 509010 TGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTG 508951
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | || | ||||| | ||||||||| ||| | || | ||| || ||||| || |
Sbjct 508950 ACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGG 508891
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | ||| || || || ||||| ||| | | |||| | || || | | ||| |
Sbjct 508890 GAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGA 508831
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|||||| ||| || | ||| || ||||| || || || ||||||||||||
Sbjct 508830 CTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCATA 508781
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|| ||||| | ||||| ||||| || || |||||||| || |||| | |||||
Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
| || || |||||| | || | || ||||| || || || | || ||||||||
Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|| || ||||| |||| | ||| || | | ||| ||||||| || || | |||
Sbjct 509098 ATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTT 509039
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || || || |||||||||||
Sbjct 509038 CCTGTCAGGGTCTTGACGAAGATTTGCAT 509010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424872035830704
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