Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1090 340 2e-88 seq404 123 2e-23 >seq1090 Length=275775 Score = 340 bits (376), Expect = 2e-88 Identities = 1018/1549 (66%), Gaps = 49/1549 (3%) Strand=Plus/Minus Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468 || || |||||||| || ||||||| || || || || | ||||||||||||||| || Sbjct 261582 TCAACAGTGAATTGTATAGCATTGGCAGCTGGTTTAGTTCTCAAATAATACATGCCCGTC 261523 Query 130469 TTGAGTCCAATTTTGTGTCCAT-AATTG---TGGATGCTGCACATTGTTTG--GTAATTG 130522 || || ||| ||| ||| ||| | || || || | |||| ||| ||| Sbjct 261522 TTAAGGCCAGCTTT----CCAGGAATAGAAATGTAT--TGAAGTCAATTTGCCGTAGTTG 261469 Query 130523 GGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 || | ||||| ||| |||| ||||| ||| ||||| ||||| || | || ||| Sbjct 261468 GGCTCGGCCACATGTATATTGAAGGATTGACTTTGGTCAATGAAAGCTCCACGATCAGCA 261409 Query 130583 GCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 ||||| | | |||| || || ||||| | || ||||| || || | || Sbjct 261408 GCCATTTTAATGGTGGTCTTGACAGAAATTTCCCATACCGTTTTGTAGAGCTCTCGTATT 261349 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702 | |||||| || | | || ||| | | || | | | ||||||| || | Sbjct 261348 TCTTTGGGAATTTCCTCGATGTTTTGTATGGAGCCACGGCTAGAAATAATTTTATTTTTC 261289 Query 130703 ATACTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAATGAT 130761 || | ||| | | | || | | ||| |||||| | |||||||| ||| | || Sbjct 261288 ATTTCCTCATCCCATAGGTCGAGTTCGGTCAA-ATCTTTAAGCAAATGATGATTGACAAT 261230 Query 130762 TTGAAAATCACCAGCCAGGAC---GCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAA 130818 | || ||||| | || || |||| || |||||||| ||| ||||||| || Sbjct 261229 GTTGAATTCACCCGATAGTACACGGCGTGTA---TAAATGTTTGAAGTGTACGGTTCGAA 261173 Query 130819 GGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAG 130878 | ||| |||||||| | ||||| || || | || ||||||||| |||| | || Sbjct 261172 AGCTTCATTGTTGCCCATAATTTGGGCAGTCGAAGCCGTGGGCATGGGGGCCAGGAGCAG 261113 Query 130879 AGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGA 130938 ||||| || | ||| || | | ||| || ||| | || |||||||||| ||| Sbjct 261112 CGAATTGCGTACACCATGTTTGGCAATTCTTTCCTTTAGGGCAGCCCAATCCCAGAGATC 261053 Query 130939 GGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT--- 130995 ||| || || ||||||||||| ||| |||| ||||| ||||| || | || || Sbjct 261052 GGTGGGC---ACCTTGTTCCACATGTCATATTGAAGTATACCTTTGCTCACTGGGCTTCC 260996 Query 130996 -GGATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAG 131054 |||| ||| ||| ||| || || ||||| || || |||||||||| Sbjct 260995 TGGAT----ACGTTTCATAGGGACCATCTTGTTCAGCCAATTCACAACTTGCTTCCAAAG 260940 Query 131055 CTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGT 131114 | || || ||||| ||||| ||||||| ||| |||| || | | ||| |||| Sbjct 260939 CACCATAGTAAATAGTTTCAAATATTTGTTGATTCAATTTGAAGGCCTCCTCGCTTTCGT 260880 Query 131115 AAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTC 131174 | ||| | ||| | ||| | || || || | |||||| | |||| ||| | || | Sbjct 260879 AGGGATAACGCATGAGAATTAGAGTATCGGCAAAACCCTGGACACCAATGCCAATGGGAC 260820 Query 131175 TATGTTTTAAATTACATTTACGCGAA-CATTCGGTGGGATAAAGGTTAATGTCAATTATT 131233 |||| | | |||| |||| | | | | | |||| ||| ||| | || || ||| Sbjct 260819 GATGTCTGAGATTAGATTTTCTGGCCTCCTGCAGTGG-ATAGTAGTTGACATCTATGATT 260761 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 ||||| | ||||||| | || | || | || | |||||||| | || ||||| || Sbjct 260760 TTGTTGAGATTGCGCGCCACGACTTTAGATACTGTCTTCAATTTCTTAAAGTCAAAAGTT 260701 Query 131294 CCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTT 131353 ||||| | | ||||| || | || || || |||| || || || || || Sbjct 260700 T---TTTCGGGCGTCACAAACATGTTCAGGCAAATGGAGGCCAAGTTGCAGACAGCGATT 260644 Query 131354 TCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413 || || | |||| | ||| ||||| | ||||||||| |||| || |||||||| Sbjct 260643 TCATCCGGTGCTGAATATTCAACGATTTCTGTGCACAAATTGCTGCATTTAATGGTGCCA 260584 Query 131414 AAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCC 131472 | |||||||||||| ||||| || | ||| | |||||| | | ||||||||| || || Sbjct 260583 ACATTTTGTTGATTACTTTT-GCGATTACAAGAGTCCTTAAATAGCATGTAGGGAGTTCC 260525 Query 131473 CGTTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATAT 131530 ||||| ||||| | ||| |||||| | | |||| | | || ||| | | | Sbjct 260524 AGTTTCTACTTGGGATTCTATAATGGCAAACCAAAGCGCCTGCG---CCTTAATGGTTCT 260468 Query 131531 -TTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGA 131589 || || |||| |||||||| |||||||| | | | ||||| | || || | || Sbjct 260467 GTTAGCTTTGCCGGCCTTTTCGTATTTTTCGTAAAGCTTGTCAAATTCTTCACCCCA-GA 260409 Query 131590 ACT-GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAA 131648 || | | ||||||| | ||||||||||| ||||| ||||||| | ||| | Sbjct 260408 CCTCATGGAGTCCTGGACATTTGTGAGGACACATTAGGGACCAATCGCCGTTTTCTTCCA 260349 Query 131649 CTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCT 131708 | || |||||||||||| || | ||| | || || || |||||||| || | || Sbjct 260348 CACGTCGCATAAACAAATCTGGTATCCAAAGAGCATAGAAAAGATCTCTGGCACGATGCT 260289 Query 131709 CTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTT 131768 ||||| | || || | ||||| |||| ||||| || || ||||||| |||||| |||| Sbjct 260288 CTTCTTTGCCGGTATTCTTTTTTAAATCCAAAAACTCAAAGATGTCCGAATGCCAAGGTT 260229 Query 131769 CCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCA 131825 |||| || | || | ||| || || || ||| || |||| ||| | || | | Sbjct 260228 CCAAGTAGATGGCAAATGCACCAGGACGTTTGCCACCACCCTGATCAACGTAGCGTGCAA 260169 Query 131826 TGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAA 131885 || ||| |||| | ||||||||| ||||||| |||| | ||||||| |||| | Sbjct 260168 CATTATTGAATACTCTTAACATGGGCACCAAACCATTGGAGGTTCCATTAGTGCCGGCTA 260109 Query 131886 TGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 || | | || || || | || || || |||| |||||||||||| Sbjct 260108 TGGAAGTTCCCTTAGCGCGAATGCAATGGACATTGATTCCAATACCTCC 260060 >seq404 Length=684826 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||||||||||| || ||||| ||||||||||||||||| || Sbjct 506576 TGCCACCACGAAGGCGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAG 506517 Query 27079 TCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || |||| ||| ||||||| ||||| || || ||| |||| | |||||||| || || Sbjct 506516 ACAATGTT-CGCCCGTCTTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGTTGGTCTGGT 506458 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || ||||| || || ||| ||| | |||| | || || | | ||| Sbjct 506457 GGGATTCCTTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTATCAGAAGGCTCA 506398 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | || || | ||| || |||| ||||| |||||||||||||| Sbjct 506397 ACCTCCAAGGTGATGGTTTTACCAGTCAATGTTTTTACAAAGATTTGCAT 506348 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||||| ||||| ||||||||||| || |||||| || | || ||||||| Sbjct 506784 ACCAAATGTAGTGTAGATTCTTTTTGAATGTTATAGTCGGACAATGTACGTCCGTCTTCC 506725 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || || ||| |||| | |||||||||||| || || | ||| ||||| || Sbjct 506724 AATTGCTTGCCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGA 506665 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | |||||| ||| || | | ||||||||| || || |||| ||| Sbjct 506664 ATTTTGGCCTTAACATTTTCTATAGTATCAGAAGGTTCAACTTCCAGTGTGATAGTTTTT 506605 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| | || || || || |||||||| Sbjct 506604 CCCGTTAATGTCTTAACGAATATTTGCAT 506576 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || ||||| | ||||| || || || || ||||||||| || | || | Sbjct 507018 CGCAAAACTAAATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGTGTACGACCA 506959 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| || |||||| |||| | ||||||||| || || || | || || || Sbjct 506958 TCTTCCAACTGCTTGCCGGCGAAAATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTG 506899 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| ||||| | |||| | ||||| | | || ||||| || || || Sbjct 506898 TCTTGAATCTTGGCTTTCACGTTTTCGATGGTGTCCGAAGGCTCGACTTCGAGGGTGATG 506839 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| |||| || || || |||||||||||| Sbjct 506838 GTTTTGCCAGTCAAGGTCTTGACGAAGATTTGCATA 506803 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| ||||| || ||| || | | || | ||||| Sbjct 506328 ACCAAATGAAGTGTAGATTCCTTTTGGATATTATAATCGGACAAGGTACGTCCATCTTCC 506269 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||||||||| | || | ||| |||||||| || || | || |||||||| Sbjct 506268 AGCTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCTTGA 506209 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | |||| | || || | || |||||| || | || || | ||| Sbjct 506208 ATCTTGGCTTTAACATTTTCAATGGTATCAGAGGGTTCAACCTCCAATGTGATGGTCTTG 506149 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | || ||||| ||||| |||||| Sbjct 506148 CCAGTTAATGTCTTCACGAAGATCTGCATA 506119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || | |||||| || | || || ||||| || ||||| || || Sbjct 509010 TGCCACCACGGAGACGGAGTACCAAGTGGAGGGTCGATTCTTTCTGGATATTATAATCTG 508951 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | || | ||||| | ||||||||| ||| | || | ||| || ||||| || | Sbjct 508950 ACAATGTACGACCATCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGATCTGGGG 508891 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||| ||| | | |||| | || || | | ||| | Sbjct 508890 GAATACCTTCCTTGTCTTGAATCTTAGCTTTGACGTTTTCAATGGTATCGGATGGTTCGA 508831 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| ||| || | ||| || ||||| || || || |||||||||||| Sbjct 508830 CTTCTAAAGTGATGGTTTTTCCAGTCAGGGTCTTGACGAAGATTTGCATA 508781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | ||||| ||||| || || |||||||| || |||| | ||||| Sbjct 509218 ACTAAATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGACCATCTTCC 509159 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || |||||| | || | || ||||| || || || | || |||||||| Sbjct 509158 AATTGCTTGCCGGCGAAGATTAAGCGTTGTTGGTCTGGGGGAATGCCTTCTTTATCTTGA 509099 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||||| |||| | ||| || | | ||| ||||||| || || | ||| Sbjct 509098 ATTTTAGCTTTCACATTTTCGATAGTATCGGATGGTTCGACTTCTAATGTGATGGTTTTT 509039 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || || ||||||||||| Sbjct 509038 CCTGTCAGGGTCTTGACGAAGATTTGCAT 509010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424872035830704