Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq540 125 9e-24 >seq540 Length=484570 Score = 125 bits (138), Expect = 9e-24 Identities = 287/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| || ||||| || |||| ||| || || | ||||| |||| |||||||||| Sbjct 95577 AACCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACC 95636 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | |||||||||| | || ||||| | || | | || ||| || ||| | Sbjct 95637 AAACTGGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGTGAGTT--TTGTGAAGATGTACCTCGTTTGAGA 179060 ||| ||| || |||| || | || || | |||| |||||||| | | || Sbjct 95697 GATGAAAAATCATACGGGC--CAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAG- 95753 Query 179061 CGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 179119 |||| || |||||||| | | | || || || ||||| | ||||| || || |||| Sbjct 95754 CGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGA 95813 Query 179120 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACT 179178 ||||||| || |||| |||| | |||||| || ||||| || || || || || ||| Sbjct 95814 TATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGC-AGTGAAACT 95872 Query 179179 TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATC 179238 |||||||||||||| || ||| | || | || | | | | || || ||||||| | Sbjct 95873 TCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACC 95932 Query 179239 TCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGAGG 179298 ||| |||| || | |||||| | | |||||||||| | ||| |||||||| | Sbjct 95933 TCACGCTTGTCATTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAG 95992 Query 179299 CCGTC 179303 || || Sbjct 95993 CCATC 95997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618342110041520