Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2111 120 4e-22
seq540 93.3 5e-14
>seq2111
Length=88771
Score = 120 bits (132), Expect = 4e-22
Identities = 297/448 (66%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585
|||||| || |||||||| || | || | ||| | ||||| || || || || |||||
Sbjct 7085 ATCAAAACGTCCTGGACGCAGCAAGGCTTTATCTAAAATATCCACACGGTTTGTAGCGGC 7144
Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645
| || |||| | ||| ||| |||||||||||| || ||||||||| || |
Sbjct 7145 CAGCACCACAACATTTGTGGTGGTATTAAAACCATCCATTTCCACCAAAAGTTGATTTAG 7204
Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTGCGTTGCTTTCCCACGG 9704
|| | ||| |||| || || | || | | | | | |||| |||||| |
Sbjct 7205 TGTGTTTTCTTGTTCCGAATG-GCCGCCAAAGGATTTACCGCCACGTTTGCGTCCCACAG 7263
Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 9764
|||| || ||||| || || | ||||| || ||||| ||| || | |||| | |
Sbjct 7264 CATCGATTTCATCGATAAACAGAATGCAAGGAGCATTTTTGCGTGCCATGGCAAACATGT 7323
Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824
| |||||||| || || |||||||||||||| |||| ||| | || | | || |
Sbjct 7324 CACGTACACGAGAGGGACCAACACCAACAAACATTTCCAAAAACTCTGAGCCAGAGACTG 7383
Query 9825 GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9884
||||| || ||||| | ||| || ||| ||||| || | | |||||| || || |
Sbjct 7384 TAATGAAAGGCACATTGGCTTCTCCGGCAGTGGCTTTAGCCAACATAGTCTTTCCTGTGC 7443
Query 9885 CTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCT 9944
| || ||| | || | |||||| ||||| || || || ||| |||| | |
Sbjct 7444 CAGGTGGACCTGTCAGCATAGCACCTTTGGGAATTTTAGCCCCCAGATCAATGTATTTTT 7503
Query 9945 CAGGTTGCTTAAGAAAATCCACAATTTC 9972
||| | |||||||| | ||||| |||
Sbjct 7504 GAGGATTTTTAAGAAAGTTCACAAATTC 7531
>seq540
Length=484570
Score = 93.3 bits (102), Expect = 5e-14
Identities = 280/425 (66%), Gaps = 8/425 (2%)
Strand=Plus/Plus
Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335
|||| ||||||||||| || | || || || | ||||| || | ||||||| ||
Sbjct 95577 AACCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACC 95636
Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395
| |||| ||||| ||||||| || | || | | | |||||||| |
Sbjct 95637 AAACTGGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696
Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCT--TTGTAAAGATATACCTCGTTTGAGA 168453
||| ||| ||| | ||||| | | || | |||||||||| || | | ||
Sbjct 95697 GATGAAAAATCATACGGGC--CAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAG- 95753
Query 168454 CGCA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512
|||| ||||| ||||| | | | ||||| |||||||| | ||||| || || ||||
Sbjct 95754 CGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGA 95813
Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACT 168571
||||||| || |||| |||| | ||||| || ||||| || | || || || |||
Sbjct 95814 TATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGC-AGTGAAACT 95872
Query 168572 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 168631
|||||||| ||||| || | | || | || | | | | || || || |||| |
Sbjct 95873 TCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACC 95932
Query 168632 TCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 168691
||| |||| ||| | |||||| | |||| ||||| ||||| ||||||||
Sbjct 95933 TCACGCTTGTCATTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAG 95992
Query 168692 CCATC 168696
|||||
Sbjct 95993 CCATC 95997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583173004668080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |