Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2111 120 4e-22 seq540 93.3 5e-14 >seq2111 Length=88771 Score = 120 bits (132), Expect = 4e-22 Identities = 297/448 (66%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || |||||||| || | || | ||| | ||||| || || || || ||||| Sbjct 7085 ATCAAAACGTCCTGGACGCAGCAAGGCTTTATCTAAAATATCCACACGGTTTGTAGCGGC 7144 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 | || |||| | ||| ||| |||||||||||| || ||||||||| || | Sbjct 7145 CAGCACCACAACATTTGTGGTGGTATTAAAACCATCCATTTCCACCAAAAGTTGATTTAG 7204 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTGCGTTGCTTTCCCACGG 9704 || | ||| |||| || || | || | | | | | |||| |||||| | Sbjct 7205 TGTGTTTTCTTGTTCCGAATG-GCCGCCAAAGGATTTACCGCCACGTTTGCGTCCCACAG 7263 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 9764 |||| || ||||| || || | ||||| || ||||| ||| || | |||| | | Sbjct 7264 CATCGATTTCATCGATAAACAGAATGCAAGGAGCATTTTTGCGTGCCATGGCAAACATGT 7323 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | |||||||| || || |||||||||||||| |||| ||| | || | | || | Sbjct 7324 CACGTACACGAGAGGGACCAACACCAACAAACATTTCCAAAAACTCTGAGCCAGAGACTG 7383 Query 9825 GGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9884 ||||| || ||||| | ||| || ||| ||||| || | | |||||| || || | Sbjct 7384 TAATGAAAGGCACATTGGCTTCTCCGGCAGTGGCTTTAGCCAACATAGTCTTTCCTGTGC 7443 Query 9885 CTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCT 9944 | || ||| | || | |||||| ||||| || || || ||| |||| | | Sbjct 7444 CAGGTGGACCTGTCAGCATAGCACCTTTGGGAATTTTAGCCCCCAGATCAATGTATTTTT 7503 Query 9945 CAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||| | |||||||| | ||||| ||| Sbjct 7504 GAGGATTTTTAAGAAAGTTCACAAATTC 7531 >seq540 Length=484570 Score = 93.3 bits (102), Expect = 5e-14 Identities = 280/425 (66%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| ||||||||||| || | || || || | ||||| || | ||||||| || Sbjct 95577 AACCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACC 95636 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | |||| ||||| ||||||| || | || | | | |||||||| | Sbjct 95637 AAACTGGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCT--TTGTAAAGATATACCTCGTTTGAGA 168453 ||| ||| ||| | ||||| | | || | |||||||||| || | | || Sbjct 95697 GATGAAAAATCATACGGGC--CAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAG- 95753 Query 168454 CGCA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGA 168512 |||| ||||| ||||| | | | ||||| |||||||| | ||||| || || |||| Sbjct 95754 CGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGA 95813 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACT 168571 ||||||| || |||| |||| | ||||| || ||||| || | || || || ||| Sbjct 95814 TATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGC-AGTGAAACT 95872 Query 168572 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATC 168631 |||||||| ||||| || | | || | || | | | | || || || |||| | Sbjct 95873 TCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACC 95932 Query 168632 TCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGA 168691 ||| |||| ||| | |||||| | |||| ||||| ||||| |||||||| Sbjct 95933 TCACGCTTGTCATTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAG 95992 Query 168692 CCATC 168696 ||||| Sbjct 95993 CCATC 95997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583173004668080