Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq540 105 7e-18
seq1090 86.0 7e-12
>seq540
Length=484570
Score = 105 bits (116), Expect = 7e-18
Identities = 293/444 (66%), Gaps = 8/444 (2%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTA--AA 151933
|| |||||||| || || || || || |||| | ||| || | ||| || || ||
Sbjct 95579 CCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACCAA 95638
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
||| || || | | |||||| ||||| | |||| | ||| | || || || | |
Sbjct 95639 ACT--GGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696
Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053
||| || ||| || | || |||| || | || |||||||| || | || ||
Sbjct 95697 GATGAAAAATCATACGGGCCAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAGCGC 95756
Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113
|||||||||||| | || || || || ||||| || |||||| || ||||||| |
Sbjct 95757 AATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGATAT 95816
Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173
|||| | |||||| | || || |||||||| ||||| || ||||| ||||||
Sbjct 95817 TGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGCAGTGAAACTTCAC 95876
Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232
|||| || || || | | || | | | | || | | || || ||||||| || |
Sbjct 95877 CGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACCTCAC 95936
Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291
| | |||| || ||||| |||| | |||||||| || ||| || || || ||
Sbjct 95937 GCTTGTCA--TTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAGCC 95994
Query 152292 GTCCACCACGTGAGGAATCGAACG 152315
|| |||| |||||| |||||
Sbjct 95995 ATCTACCAAACAAGGAATGGAACG 96018
Score = 102 bits (112), Expect = 9e-17
Identities = 197/289 (68%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| || |||||||||| || || |||||||||||||| | | |||||||| ||
Sbjct 95732 GTAAAGATGTAACGAGCACTAGCGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGA 95791
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| || ||||||| ||||| | ||||| | ||||||| ||||||| ||||| || |||
Sbjct 95792 CCTCTGGGCTCCAGCAGGTTGATATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACA 95851
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || ||| || | ||||| || || || || | | || | ||| | ||
Sbjct 95852 ATTGTCATTTGCAGTGAAACTTCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCA 95911
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542
| || || || ||||||| || | |||| || ||||| ||||| | | ||||
Sbjct 95912 GAGAGTTGGGCTACCTTCACCTCACGCTTGTCA--TTACGCTTGAAGCAGGTAAACATCA 95969
Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591
|||| || || | ||||| | ||||| ||| ||| || |||||
Sbjct 95970 CCTTACGTTGGCCAGGCTTGAAGCCATCTACCAAACAAGGAATGGAACG 96018
>seq1090
Length=275775
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541
||||||| || |||||| |||| || ||||| || || ||||| || || || |||||||
Sbjct 261102 TACGCAATTCGCTGCTCCTGGCCCCCATGCCCACGGCTTCGACTGCCCAAATTATGGGCA 261161
Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578
|||| || || ||||| |||||||| | ||||| ||
Sbjct 261162 ACAATGAAGCTTTCGAACCGTACACTTCAAACATTTA 261198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547133630311600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |