Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq540 105 7e-18 seq1090 86.0 7e-12 >seq540 Length=484570 Score = 105 bits (116), Expect = 7e-18 Identities = 293/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTA--AA 151933 || |||||||| || || || || || |||| | ||| || | ||| || || || Sbjct 95579 CCTGTACCGATACCATCGGCTCCATTTACCAAGACCATAGGAATAATTGGCATATACCAA 95638 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 ||| || || | | |||||| ||||| | |||| | ||| | || || || | | Sbjct 95639 ACT--GGTTCAATTTTTTGACCATCATCGACTTCGTACTGCAACAAGGGATCATCCGAGG 95696 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| || ||| || | || |||| || | || |||||||| || | || || Sbjct 95697 GATGAAAAATCATACGGGCCAAAGGAGACATAATTGTAAAGATGTAACGAGCACTAGCGC 95756 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 |||||||||||| | || || || || ||||| || |||||| || ||||||| | Sbjct 95757 AATCCTTGCCACCAGTCAACCTAGTACCGAACTGACCTCTGGGCTCCAGCAGGTTGATAT 95816 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||| | |||||| | || || |||||||| ||||| || ||||| |||||| Sbjct 95817 TGTTCGAGCCCACATAGTTTTGGGCCAAATTAACAATTGTCATTTGCAGTGAAACTTCAC 95876 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 |||| || || || | | || | | | | || | | || || ||||||| || | Sbjct 95877 CGTGATGGTAGGCGGACATTTCAGATACGGAACCAGAGAGTTGGGCTACCTTCACCTCAC 95936 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | |||| || ||||| |||| | |||||||| || ||| || || || || Sbjct 95937 GCTTGTCA--TTACGCTTGAAGCAGGTAAACATCACCTTACGTTGGCCAGGCTTGAAGCC 95994 Query 152292 GTCCACCACGTGAGGAATCGAACG 152315 || |||| |||||| ||||| Sbjct 95995 ATCTACCAAACAAGGAATGGAACG 96018 Score = 102 bits (112), Expect = 9e-17 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || |||||||||| || || |||||||||||||| | | |||||||| || Sbjct 95732 GTAAAGATGTAACGAGCACTAGCGCAATCCTTGCCACCAGTCAACCTAGTACCGAACTGA 95791 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || ||||||| ||||| | ||||| | ||||||| ||||||| ||||| || ||| Sbjct 95792 CCTCTGGGCTCCAGCAGGTTGATATTGTTCGAGCCCACATAGTTTTGGGCCAAATTAACA 95851 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| || | ||||| || || || || | | || | ||| | || Sbjct 95852 ATTGTCATTTGCAGTGAAACTTCACCGTGATGGTAGGCGGACATTTCAGATACGGAACCA 95911 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGAC--GTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | || || || ||||||| || | |||| || ||||| ||||| | | |||| Sbjct 95912 GAGAGTTGGGCTACCTTCACCTCACGCTTGTCA--TTACGCTTGAAGCAGGTAAACATCA 95969 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 |||| || || | ||||| | ||||| ||| ||| || ||||| Sbjct 95970 CCTTACGTTGGCCAGGCTTGAAGCCATCTACCAAACAAGGAATGGAACG 96018 >seq1090 Length=275775 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 ||||||| || |||||| |||| || ||||| || || ||||| || || || ||||||| Sbjct 261102 TACGCAATTCGCTGCTCCTGGCCCCCATGCCCACGGCTTCGACTGCCCAAATTATGGGCA 261161 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 |||| || || ||||| |||||||| | ||||| || Sbjct 261162 ACAATGAAGCTTTCGAACCGTACACTTCAAACATTTA 261198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547133630311600