Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31] 12,042 sequences; 971,188,624 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1431 176 5e-39 seq1094 154 2e-32 seq404 152 6e-32 seq540 93.3 5e-14 seq149 84.2 2e-11 >seq1431 Length=173026 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | || |||||||| ||||| ||||| |||||| | | Sbjct 151094 ATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTCT 151153 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || ||||||||||| ||||||||||| || || || Sbjct 151154 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGATCAA 151213 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||| || || || || || |||| |||||| || ||||||| || Sbjct 151214 CAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAAC 151273 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || |||||| |||| ||||| | || ||||| Sbjct 151274 ATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGG 151320 >seq1094 Length=241507 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || ||||| || || ||||| | ||||| ||| | Sbjct 166282 AATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCTTC 166223 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||||||||| || ||||| || || || || ||||| || Sbjct 166222 CGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 166163 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | || |||||||| || ||| | ||||||| ||| ||| | ||||||| || Sbjct 166162 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTACAA 166103 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||| | ||| | || | |||||||| ||||| Sbjct 166102 CATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGTCTTCGTGGTGG 166055 >seq404 Length=684826 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || | |||||||| | | Sbjct 506120 ATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCCTCT 506179 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || || ||||| || || || || ||||||||||| || Sbjct 506180 GATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 506239 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| ||||| || || || |||| |||||| | | || |||||| Sbjct 506240 CAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTATAAT 506299 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || |||||| | || | ||||| || ||||| Sbjct 506300 ATCCAAAAGGAATCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 506346 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || ||||| || || || || || || ||| | Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| |||| || || ||||| |||||||| || ||||| |||||||| Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || ||||| | || |||| |||||| || | ||||| || Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||| |||| |||||||| || ||||| Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTCCGTGGTGG 507030 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || || || || ||| | || || || || Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || ||||| ||||| |||||||| || ||||| ||||| ||| Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || |||||||| || | || |||| |||||| | |||| |||||| Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || || | || | ||||| || ||||| Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGTACTCCGTCTCCGTGGTGG 509008 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || || || || || || | ||||||||| | | Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | || || |||||||| ||||| || ||||| || |||||||| Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| ||||| ||||| || || || | || || | | || || ||| Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || | ||| | || ||||| ||||| ||||| Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGCCTTCGTGGTGG 506574 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || || || || || | || || || || Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| |||| ||||||||||| || || || || ||||| |||||||| Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || |||| || || || |||||| | || |||| ||| || | ||||||| || Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || ||| ||||| | ||||| || ||||| Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGTCTACGTGGTGG 509236 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | || || ||||| ||||| | || || || | | Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | ||||| |||||||| || || || || ||||| ||||| ||| Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| || || || | || |||| ||| || | | ||||| || Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||| | || | ||||||||||| || Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGG 509464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27504 GGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563 ||| || ||||| ||||| ||||| ||| | || ||||||||||| || | || |||| Sbjct 508652 GGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGG 508711 Query 27564 TCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||||| || | ||||| || |||| ||||| || || || ||| |||| |||||||| Sbjct 508712 TCGTACACTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCT 508771 Query 27624 TCGCGGTGG 27632 || ||||| Sbjct 508772 CCGTGGTGG 508780 >seq540 Length=484570 Score = 93.3 bits (102), Expect = 5e-14 Identities = 287/442 (65%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || |||||||| ||| || ||| |||||||| || || |||||||| | || Sbjct 96018 CGTTCCATTCCTTGTTTGGTAGATGGCTTCAAGCCTGGCCAACGTAAGGTGATGTTTACC 95959 Query 32023 TGCCTCAAGAAGAACCTGTCGAG--TGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||| ||||| || || | || ||| ||||||| || || || || || | ||| Sbjct 95958 TGCTTCAAGCGTAA--TGACAAGCGTGAGGTGAAGGTAGCCCAACTCTCTGGTTCCGTAT 95901 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | || | ||||| || ||||| || | || || || || ||||| || | | Sbjct 95900 CTGAAATGTCCGCCTACCATCACGGTGAAGTTTCACTGCAAATGACAATTGTTAATTTGG 95841 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | || |||| ||| || | || || | ||| | || ||||| || ||||| || | Sbjct 95840 CCCAAAACTATGTGGGCTCGAACAATATCAACCTGCTGGAGCCCAGAGGTCAGTTCGGTA 95781 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCAC 32260 | || | | |||||||||||| || || | ||||||||||| || | | | | Sbjct 95780 CTAGGTTGACTGGTGGCAAGGATTGCGCTAGTGCTCGTTACATCTTTACAATTATGTCTC 95721 Query 32261 CTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATG 32320 ||| | | || | |||||| | || ||||| ||| | || | ||||| | | |||| Sbjct 95720 CTTTGGCCCGTATGATTTTTCATCCCTCGGATGATCCCTTGTTGCAGTACGAAGTCGATG 95661 Query 32321 ACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACG 32380 | ||||| | || || || | || | || | |||| ||| ||||||| || | Sbjct 95660 ATGGTCAAAAAATTGAACCAGTTTGGTATATGCCAATTATTCCTATGGTCTTGGTAAATG 95601 Query 32381 GTGCAGAAGGCATCGGAACGGG 32402 | || || || ||||| || || Sbjct 95600 GAGCCGATGGTATCGGTACAGG 95579 >seq149 Length=1119921 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 24985 TTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACG 25044 |||| |||| || | ||| | |||||||||||||| ||||| ||||| ||||| || | Sbjct 944346 TTGAATTGGGTAATTTGGATTCGAAACGTGATTGGGGTCATGCCGCCGATTACGTGGAGG 944287 Query 25045 CCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGA 25104 |||||||| ||||| |||| ||| ||| |||| ||| || | ||| ||| ||| Sbjct 944286 CCATGTGGATGATGCTTCAACGAGATACGCCCTCCGATTATGTAATAGCCACAGGTGAGA 944227 Query 25105 CGCA 25108 |||| Sbjct 944226 CGCA 944223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570224554027040