Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stomoxys_20calcitrans_20[refseq_20GCF_5F001015335.1_202015-05-31]
12,042 sequences; 971,188,624 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1431 176 5e-39
seq1094 154 2e-32
seq404 152 6e-32
seq540 93.3 5e-14
seq149 84.2 2e-11
>seq1431
Length=173026
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || |||||||| || | || |||||||| ||||| ||||| |||||| | |
Sbjct 151094 ATGCAGATTTTTGTCAAAACTTTAACGGGCAAGACCATTACGCTTGAAGTTGAGCCGTCT 151153
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | ||||| || ||||||||||| ||||||||||| || || ||
Sbjct 151154 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCTGATCAA 151213
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||| ||||| || || || || || |||| |||||| || ||||||| ||
Sbjct 151214 CAACGTTTAATATTTGCCGGAAAACAGCTTGAAGATGGTCGTACGTTATCAGACTACAAC 151273
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||||||||| || |||||| |||| ||||| | || |||||
Sbjct 151274 ATACAAAAGGAATCAACGCTTCATTTAGTTTTGCGATTGCGTGGTGG 151320
>seq1094
Length=241507
Score = 154 bits (170), Expect = 2e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||||||||| || ||||| || || ||||| | ||||| ||| |
Sbjct 166282 AATGCAGATCTTTGTCAAGACCCTAACCGGTAAAACCATTACCTTGGAGGTAGAGCCTTC 166223
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| |||| | ||||||||||| || ||||| || || || || ||||| ||
Sbjct 166222 CGACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 166163
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || |||||||| || ||| | ||||||| ||| ||| | ||||||| ||
Sbjct 166162 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAGGATGGTCGCACCTTGTCAGACTACAA 166103
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| || ||| | ||| | || | |||||||| |||||
Sbjct 166102 CATTCAAAAGGAGTCGACTTTGCATTTGGTACTCCGTCTTCGTGGTGG 166055
>seq404
Length=684826
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || |||||||| || || | |||||||| | |
Sbjct 506120 ATGCAGATCTTCGTGAAGACATTAACTGGCAAGACCATCACATTGGAGGTTGAACCCTCT 506179
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | || || || ||||| || || || || ||||||||||| ||
Sbjct 506180 GATACCATTGAAAATGTTAAAGCCAAGATTCAAGATAAAGAAGGCATTCCTCCAGATCAA 506239
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| ||||| || || || |||| |||||| | | || ||||||
Sbjct 506240 CAACGTTTGATCTTTGCCGGTAAACAGCTGGAAGATGGACGTACCTTGTCCGATTATAAT 506299
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||||||||| || |||||| | || | ||||| || |||||
Sbjct 506300 ATCCAAAAGGAATCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 506346
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | || ||||| || || || || || || ||| |
Sbjct 506804 ATGCAAATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTCGAAGTCGAGCCTTCG 506863
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| |||| || || ||||| |||||||| || ||||| ||||||||
Sbjct 506864 GACACCATCGAAAACGTGAAAGCCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 506923
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | ||||| || || ||||| | || |||| |||||| || | ||||| ||
Sbjct 506924 CAGCGTTTGATTTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACACTGTCCGACTACAAC 506983
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || ||| |||| |||||||| || |||||
Sbjct 506984 ATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCTCCGTGGTGG 507030
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || || || || ||| | || || || ||
Sbjct 508782 ATGCAAATCTTCGTCAAGACCCTGACTGGAAAAACCATCACTTTAGAAGTCGAACCATCC 508841
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | || ||||| ||||| |||||||| || ||||| ||||| |||
Sbjct 508842 GATACCATTGAAAACGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 508901
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || |||||||| || | || |||| |||||| | |||| ||||||
Sbjct 508902 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGATGGTCGTACATTGTCAGATTATAAT 508961
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||| || || || | || | ||||| || |||||
Sbjct 508962 ATCCAGAAAGAATCGACCCTCCACTTGGTACTCCGTCTCCGTGGTGG 509008
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || || | || || || || || || | ||||||||| | |
Sbjct 506348 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACCATCACCTTGGAGGTTGAGCCTTCT 506407
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| |||| | || || |||||||| ||||| || ||||| || ||||||||
Sbjct 506408 GATACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAAGGAATCCCACCAGACCAA 506467
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | ||||| ||||| ||||| || || || | || || | | || || |||
Sbjct 506468 CAGCGATTGATTTTCGCTGGCAAGCAGCTTGAAGACGGGCGAACATTGTCTGATTACAAT 506527
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| ||||| || | ||| | || ||||| ||||| |||||
Sbjct 506528 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGCCTTCGTGGTGG 506574
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || || || || || | || || || ||
Sbjct 509010 ATGCAAATCTTCGTCAAGACCCTGACAGGAAAAACCATCACATTAGAAGTCGAACCATCC 509069
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| |||| ||||||||||| || || || || ||||| ||||||||
Sbjct 509070 GATACTATCGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGCATTCCCCCAGACCAA 509129
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || |||| || || || |||||| | || |||| ||| || | ||||||| ||
Sbjct 509130 CAACGCTTAATCTTCGCCGGCAAGCAATTGGAAGATGGTCGCACTTTGTCAGACTACAAC 509189
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || ||||| || || ||| ||||| | ||||| || |||||
Sbjct 509190 ATCCAGAAAGAATCTACCCTCCATTTAGTCCTTCGTCTACGTGGTGG 509236
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| | || || ||||| ||||| | || || || | |
Sbjct 509238 ATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAACCCTCT 509297
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | |||| | ||||| |||||||| || || || || ||||| ||||| |||
Sbjct 509298 GATACCATAGAAAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCCAGATCAG 509357
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || ||||| || || || | || |||| ||| || | | ||||| ||
Sbjct 509358 CAACGTTTGATCTTTGCCGGCAAACAGTTGGAAGATGGTCGCACATTGTCGGACTACAAC 509417
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| || || ||| | || | ||||||||||| ||
Sbjct 509418 ATCCAGAAGGAATCAACACTCCATTTGGTGCTTCGTCTTCGCGGAGG 509464
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 27504 GGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA 27563
||| || ||||| ||||| ||||| ||| | || ||||||||||| || | || ||||
Sbjct 508652 GGAAGGTATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGATGG 508711
Query 27564 TCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||||| || | ||||| || |||| ||||| || || || ||| |||| ||||||||
Sbjct 508712 TCGTACACTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCATTTAGTTTTGCGTCT 508771
Query 27624 TCGCGGTGG 27632
|| |||||
Sbjct 508772 CCGTGGTGG 508780
>seq540
Length=484570
Score = 93.3 bits (102), Expect = 5e-14
Identities = 287/442 (65%), Gaps = 4/442 (1%)
Strand=Plus/Minus
Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022
|| |||||||| ||| || ||| |||||||| || || |||||||| | ||
Sbjct 96018 CGTTCCATTCCTTGTTTGGTAGATGGCTTCAAGCCTGGCCAACGTAAGGTGATGTTTACC 95959
Query 32023 TGCCTCAAGAAGAACCTGTCGAG--TGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080
||| ||||| || || | || ||| ||||||| || || || || || | |||
Sbjct 95958 TGCTTCAAGCGTAA--TGACAAGCGTGAGGTGAAGGTAGCCCAACTCTCTGGTTCCGTAT 95901
Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140
| || | ||||| || ||||| || | || || || || ||||| || | |
Sbjct 95900 CTGAAATGTCCGCCTACCATCACGGTGAAGTTTCACTGCAAATGACAATTGTTAATTTGG 95841
Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200
| || |||| ||| || | || || | ||| | || ||||| || ||||| || |
Sbjct 95840 CCCAAAACTATGTGGGCTCGAACAATATCAACCTGCTGGAGCCCAGAGGTCAGTTCGGTA 95781
Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCAC 32260
| || | | |||||||||||| || || | ||||||||||| || | | | |
Sbjct 95780 CTAGGTTGACTGGTGGCAAGGATTGCGCTAGTGCTCGTTACATCTTTACAATTATGTCTC 95721
Query 32261 CTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATG 32320
||| | | || | |||||| | || ||||| ||| | || | ||||| | | ||||
Sbjct 95720 CTTTGGCCCGTATGATTTTTCATCCCTCGGATGATCCCTTGTTGCAGTACGAAGTCGATG 95661
Query 32321 ACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACG 32380
| ||||| | || || || | || | || | |||| ||| ||||||| || |
Sbjct 95660 ATGGTCAAAAAATTGAACCAGTTTGGTATATGCCAATTATTCCTATGGTCTTGGTAAATG 95601
Query 32381 GTGCAGAAGGCATCGGAACGGG 32402
| || || || ||||| || ||
Sbjct 95600 GAGCCGATGGTATCGGTACAGG 95579
>seq149
Length=1119921
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 24985 TTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTCGACG 25044
|||| |||| || | ||| | |||||||||||||| ||||| ||||| ||||| || |
Sbjct 944346 TTGAATTGGGTAATTTGGATTCGAAACGTGATTGGGGTCATGCCGCCGATTACGTGGAGG 944287
Query 25045 CCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGTCAGA 25104
|||||||| ||||| |||| ||| ||| |||| ||| || | ||| ||| |||
Sbjct 944286 CCATGTGGATGATGCTTCAACGAGATACGCCCTCCGATTATGTAATAGCCACAGGTGAGA 944227
Query 25105 CGCA 25108
||||
Sbjct 944226 CGCA 944223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570224554027040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |